Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00368 ATGGGAGTTCAAGAGAGAGACCCTCTGGCACAGTTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGAAAGGTTGCTGGGCACCATTTTTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTATTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGTTCACGGCCAAACAGAGTTGCGGGTTCTGGATATTGGAAAGCCACGGGAACTGATAAGATTATCACCACCGAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCGCGCAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAAAAGAACTCGAGTTCGCAAAAGGTTGAGACCAACCTTTGGGGCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCACGTGGAAGACATGGTCGAATCGTTTTTGGAGATCGATGATAAGTGCTTCAATTTTCCGGGTGTGAACTCGCTCAAAACAATGCAACAACAGGACGAGAAATTCGGGTTTCAAAACATAAGATCCGGATTTTTTTCTGATTGGGTCACCCCACCGGATCTTGATTCAATTTCCGAATTCGGGTCAGGTTGCAGAACCCAAGAGATGGTGAATTATGATTTCAATGACTTATTTGTCCCTTCTGTGCCGCCATTCGGCCACGTGGAGTTCATGTCAGGGGCACCCACGGAGGAGGAAGTTCAAAGCTGTGTGAGAACCCAACGGGCTGACGGAGCGGGATATTTTCAGCAGAACCCGAATGCCCGAAATTTGTCCGGTTCCAACGAAACGTTTGGGTTGGGGTTCACGGATCAGCAAATCAGGTTCGGGTTACGGAACTAG 1011 0.4619 MGVQERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVETNLWGKECSNGSSPSSSSHVEDMVESFLEIDDKCFNFPGVNSLKTMQQQDEKFGFQNIRSGFFSDWVTPPDLDSISEFGSGCRTQEMVNYDFNDLFVPSVPPFGHVEFMSGAPTEEEVQSCVRTQRADGAGYFQQNPNARNLSGSNETFGLGFTDQQIRFGLRN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00368 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vian5g00368 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vian5g00368 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 203 - -
Vian5g00368 336 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Vian5g00368 336 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vian5g00368 336 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00368 Vian-Chr5 8737287 8738861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00368 1 251 NAC Transcription Factor Family AT3G15500 64.368 1.35e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g00368 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00368 - - gmx:100811301 577.4