Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00367 ATGACCCCAGCCGTGGAGGAGGACCACCACGACCCTTCCCTTTTCCACGACTCCAACGACCGTTTGCTCTCTTCATGCTCCTGCTCCACGTCCGCCTCCGACGACGACGCTCCCACTCCCCAAAACGACACCAAACCTATTAAAAACGACACTCATGCCCTCCCCCAATTCCCCTTCCCCACCATGTGCAAGTACGATGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGACAGTTCGGTCTCCCCACCCCGCCTTCCCCCGCCGCTACCATCCCCCGATCATCCTCCTCTCACCAATGCACCGACACTTCCACCGCCGCCGCCACTATTCCCCGATCGAAATCCGACAACACCGCGGATCGCGGTACCAAGCATTGCAAATCATCCGTTGTTCCCATTCGCGACAATGACAACGGTTTTCTCGTGAATAATAATATTAATATTAATAGTAGTATTAGTGGTAGTCATTCTGTGAATAATAGGATTTGTGTGAGTGTATCTGAGGAGGGTGGAAATGGGGAGGGGAATGTGGTCGATGAAGTGGAGCAAGCGTGTACAATTAGGGATTTGGACAATGGGAAAGAGTTTGTGGTGAAGCGGGATGGGGTGTGGAATGAGGTTAAGGAGGTGGGGACTGGAAGGCGTTTGACTGTGGAGGAGTTTGAGATGACGGTGGGGCATTCTCCGATTGTTCAGGAGCTAATGAGGAGGCAGAGTGCGGAGGAAGGTCGCGATGGGGACGGCGTGGATGGAGAAGGTGATTGTGGGAATGCTGGTGGTGTTGATGATGAAGGGGATGGTGGCAAAGTGAGGAGAAAAGGTGGGTGGTTTAAGTTCATGAGTTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGGAGAAGTGGTGATGAGAGGGATACGTCTTCCTCAGAGAAGGCGGGTGGCCGGAGGTCAAGCTCTGCCACCGACGATAGCCAGGATGGTGGTAGTGGTTTGGTTCAGGGGGGTGAGAGAGTGAGGGTTAGACAGTATGGGAAGTCTTGTAAGGAGGTTACAGGGCTTTATAAGAGCCAGAAGATTCAGGCTCATGTTGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCTAGTGCCGGTGAAGATTGTGTGATTCATGTTTGGCGGGTTCTGGAGTCTGAGAGGAAGGGCGAGTTACTCGTGGAGAAACCGGACGATGGGAATTTGAACATGTTGTTTGTTGTTAATGGGTCGCCGGAGCCTTCTTCTCCTGGCATGGAGAATAATTTGGAAAAGAAGAGAAGGGGGAGGTTGTCTGTCAGCAGAAAATCGTTGAGCGTGGACCAGTTAGTAGTGCCGGAAACTGTGTTTGCTCTCACTGATAAACCGGTTTGCACCTTTAAGGGTCATCTCCATGACGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGCCTGTGGCATTTGTCTAGCAAGTCTTGTCTGAAAGTTTTTGCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGCGGATGATAGATACTTCATTAGTGGATCTTTGGATGCCAAGGTTCGTATTTGGAGCATACCTGATAGACAAGTTGTTGATTGGACTGATCTACATGAGATGGTCACTGCTGCTTGCTATACGCCAGATGGTCAGGGTGCACTAGTGGGTACTTACAAGGGTAGCTGTCATTCATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATAAATTTGCAGAACAGGAGAAAGAGATCAAACCACAAGAAAATTACTGGCTTCCAGTTTCTGCCAGGAAGTTCATCAGAAGTCCTCATCACTTCTTCTGATTCCCGGATTCGACTTGTTGATGGCATTGATCTAGTTCACAAGTTTAAAGGATTTCGCAATGCAAATAGCCAAATTTCTGCCTTCCTCACAGCAAATGGTAAATATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATATGGAGAAACGAAGCTGATTGTAGACCTAGCAGGGGTAAATGTATTACCATGACAAGCACATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCAGGTATGGATGATTCATGGGAGATGCATGATCCGTACTTTGGAGAAGAACCTGAGCTTGATGATAATAGGGATGAGGAGGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAACTTTTGGTTCTGAGGGTTCACAATTTGCTTCGGGTTGCAATAACAGTCCACTTCATGGAACCATTGCAAGTGCAACAGATAGTTATTTTATTGATAGAATTTCTGCAACGTTGCCTGAGGAAAAACTTTTGACTACAAGGGATCCAAGCGCTCAGGCAAGTGCGGATTTATCTTATGGAGTAAATCATAATATGTCAGCATGGGGTATGGTGATTGTAACTGCTGGCCTTCAGGGGGAAATTAAAATTTTCCAAAATTTTGGATTGCCTCTTGGTATATAA 2535 0.4769 MTPAVEEDHHDPSLFHDSNDRLLSSCSCSTSASDDDAPTPQNDTKPIKNDTHALPQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPTPPSPAATIPRSSSSHQCTDTSTAAATIPRSKSDNTADRGTKHCKSSVVPIRDNDNGFLVNNNININSSISGSHSVNNRICVSVSEEGGNGEGNVVDEVEQACTIRDLDNGKEFVVKRDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQSAEEGRDGDGVDGEGDCGNAGGVDDEGDGGKVRRKGGWFKFMSLKSVVVGQKERRSGDERDTSSSEKAGGRRSSSATDDSQDGGSGLVQGGERVRVRQYGKSCKEVTGLYKSQKIQAHVGSIWSIKFSLDGKYLASAGEDCVIHVWRVLESERKGELLVEKPDDGNLNMLFVVNGSPEPSSPGMENNLEKKRRGRLSVSRKSLSVDQLVVPETVFALTDKPVCTFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKVFAHSDYVTCIQFNPADDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGTYKGSCHSYNTSENKLQQKSQINLQNRRKRSNHKKITGFQFLPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISAFLTANGKYVVSASEDSHVYIWRNEADCRPSRGKCITMTSTYEHFHCKDVSVAIPWPGMDDSWEMHDPYFGEEPELDDNRDEEVSSANHPPTPVEETFGSEGSQFASGCNNSPLHGTIASATDSYFIDRISATLPEEKLLTTRDPSAQASADLSYGVNHNMSAWGMVIVTAGLQGEIKIFQNFGLPLGI 844
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00367 844 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 745 761 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 722 761 - -
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 510 544 - -
Vian5g00367 844 SUPERFAMILY WD40 repeat-like 354 681 IPR036322 GO:0005515
Vian5g00367 844 MobiDBLite consensus disorder prediction 237 276 - -
Vian5g00367 844 SMART WD40_4 546 584 IPR001680 GO:0005515
Vian5g00367 844 SMART WD40_4 637 678 IPR001680 GO:0005515
Vian5g00367 844 SMART WD40_4 353 392 IPR001680 GO:0005515
Vian5g00367 844 SMART WD40_4 463 501 IPR001680 GO:0005515
Vian5g00367 844 SMART WD40_4 504 543 IPR001680 GO:0005515
Vian5g00367 844 SMART WD40_4 597 636 IPR001680 GO:0005515
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Vian5g00367 844 MobiDBLite consensus disorder prediction 295 336 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 97 123 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 26 55 - -
Vian5g00367 844 PRINTS G protein beta WD-40 repeat signature 488 502 IPR020472 -
Vian5g00367 844 PRINTS G protein beta WD-40 repeat signature 530 544 IPR020472 -
Vian5g00367 844 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Vian5g00367 844 MobiDBLite consensus disorder prediction 1 17 - -
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 544 IPR001680 GO:0005515
Vian5g00367 844 FunFam WD repeat-containing protein 44 451 717 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 86 132 - -
Vian5g00367 844 PANTHER WD REPEAT DOMAIN 44 8 841 IPR040324 -
Vian5g00367 844 MobiDBLite consensus disorder prediction 296 312 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 26 49 - -
Vian5g00367 844 Pfam WD domain, G-beta repeat 465 500 IPR001680 GO:0005515
Vian5g00367 844 Pfam WD domain, G-beta repeat 359 391 IPR001680 GO:0005515
Vian5g00367 844 Pfam WD domain, G-beta repeat 641 677 IPR001680 GO:0005515
Vian5g00367 844 Pfam WD domain, G-beta repeat 506 543 IPR001680 GO:0005515
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 510 IPR001680 GO:0005515
Vian5g00367 844 MobiDBLite consensus disorder prediction 244 258 - -
Vian5g00367 844 MobiDBLite consensus disorder prediction 313 329 - -
Vian5g00367 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 504 - -
Vian5g00367 844 Gene3D - 346 701 IPR015943 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian5g00367 Vian-Chr5 8657421 8676913 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00367 457 675 U-box Gene Family AT1G04510 28.395 9.24e-06 47.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00367 K20241 - gmx:100806518 1356.27