Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00352 ATGGATAGTGGCTACTACAATCAGCAACACCTCCCTCACCTCGACAACAGCAACGAACCACATTTACCTCCTGGCTTCAGATTCCATCCGACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGTTCCTTCACTGGCCGAGCCATAGTTGAAGTCGATCTCAACAAGTGCGAACCATGGGAGCTTCCTGTTGTTTTTGATGATGTTTGTGATGTTGGTGGTGGTGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTGTCAGCCGCCGCAGCCACCGGCAGTTCGAAGAAAACAAGAATGAGCACATCGAACACAAGCAGCAACATGAGCCTCTGCCCGGAACCGGGTTCACCCTGTTCCATTTACCTCCCACCGCTTCTAGAATCTTCTCCTTACGCCACCAGCGGCAGCGCCGCTGCAACGTTCAACGACCGCGAAAACTACTCCTTCGAAAGTGCCGCCGCCACCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGACGCTGCCGCCTTCAACCACCTCGCTCCGCCGCCGGAACCGCCACTCGATCCTTTCTCCCGCTTTCACAGGAACAATATTGGAGTATCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCACGGCGGTTCTGACGTAGCAAACTTTACCGCCATAGCAAACTTGCCGGCGCCGGAGGATCCGAGGGTGGCCGACGGCAGTTCTGGCATGCCGATTGTACCGTCCGAATTGGACTGCATGTGGGGCTATTGA 843 0.5516 MDSGYYNQQHLPHLDNSNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPVVFDDVCDVGGGDEWVISRVFQKNNTGGASTVSAAAATGSSKKTRMSTSNTSSNMSLCPEPGSPCSIYLPPLLESSPYATSGSAAATFNDRENYSFESAAATANQREHVSCFSTMSTDAAAFNHLAPPPEPPLDPFSRFHRNNIGVSAFPCLRSLHDNLNLPFFFPPVVHGGSDVANFTAIANLPAPEDPRVADGSSGMPIVPSELDCMWGY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00352 280 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 69 - -
Vian5g00352 280 Pfam No apical meristem (NAM) protein 23 113 IPR003441 GO:0003677|GO:0006355
Vian5g00352 280 SUPERFAMILY NAC domain 18 95 IPR036093 GO:0003677|GO:0006355
Vian5g00352 280 MobiDBLite consensus disorder prediction 1 15 - -
Vian5g00352 280 Gene3D NAC domain 31 125 IPR036093 GO:0003677|GO:0006355
Vian5g00352 280 ProSiteProfiles NAC domain profile. 22 184 IPR003441 GO:0003677|GO:0006355
Vian5g00352 280 MobiDBLite consensus disorder prediction 1 25 - -
Vian5g00352 280 MobiDBLite consensus disorder prediction 97 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00352 Vian-Chr5 8144349 8146390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00352 1 68 NAC Transcription Factor Family AT5G53950 64.706 2.11e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g00352 NAM 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00352 - - gmx:100788671 267.314