Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00342 ATGGATCCGACTAAGAAGCGCAAGCTTGATGAGAATGGTTTCGGTGATTCCGACCCCCTTAAACTCTCTTCCACCGAGGCGCGCAAACTCATCGAGCGCTTCACCCCGGAGCAGCTTCTCGACATCCTTCAGGATGCGGTGGCTCGCCACGCTGACGTGCTTGCCTCCGTGCGTGCTGTCGCGGACCCCGATGTGTCGCAGCGGAAACTATTCGTGCGCGGCCTTGGGTGGGACACCACCACAGACGGCCTCCGCTCACTCTTCTCCACCTACGGTGAGCTTGAGGAGGCTGTTGTGATCGTTGACAAGGTAACCGGAAAGTCCAAGGGCTACGGCTTTGTCACCTTCCGCCACGTGGACGGTGCTCTCCTCGCCCTCCGCGAACCAAGCAAGCGCATTGACGGGCGCGTGACCGTCACGCAGCTCGCTGCAGCGGGGAACTCCGCTTCGAATGCCAACGCAGCCGATGTTGGGCTCAGGAAGATCTACGTTGCCAACGTGCCACCTGACCTTCCAGCGGACAAGCTCCTTGCGCATTTTTCTGTGTATGGTGAGATCGAAGAGGGACCCTTAGGGTTTGATAAACAAACTGGAAAATCAAAGGGGTTTGCGCTTTTTGTTTATAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTCAAGACTGTGGAAGGAAGGCAATTGAGTTGTAAACTGGCGATAACGGATGGTAAGCAAGGGAAGCGAGCCGGACCAGATTCGGGTCAGGCCCATGGGAATGTTCAGCACGGTCATGGGGATGGAGTCGGGGCTGGAATGGGGATGCCTCCTGCAGCGGGGTCTGGGCCGGGGCAGTATGGCGGCCCGCAATATGGGGGACCGGTTGGGTTGGGTTCGTATGGTGGGTTTGGTGGACAACCTCCGTTAGGTAACCATAATCATCCTCTGAATTCATCCAATCCCGTACCCGGTTCTATGGCGGGTGCTGGTGGTTATGGTGCTGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGCTCTGCGGGATTTGGTGCTGCGGGTGGGTTAGGAGGGGCTGGTGGAGGTGCTGGTGTTGGTGGTGGGCTTGGAGGAGCAAGTGGTGGTGCTGGTTCTTTGTATAGATTGCCTGGTTCTGGTGGCATGCCTGCAGGTGGTGGAGGGTATCCGGAGGGTGGTCATTATGGTTTATCAGGTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCAGTGCCTAGAGTTCCACCTGGTTCGATGTACCCCAGTGTGCCTCCTTACTACTAA 1305 0.5732 MDPTKKRKLDENGFGDSDPLKLSSTEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSTYGELEEAVVIVDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVGLRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVGLGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSAGFGAAGGLGGAGGGAGVGGGLGGASGGAGSLYRLPGSGGMPAGGGGYPEGGHYGLSGSAGYQNQHHPPSGASPVPRVPPGSMYPSVPPYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00342 434 Gene3D - 59 148 IPR012677 -
Vian5g00342 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Vian5g00342 434 MobiDBLite consensus disorder prediction 1 15 - -
Vian5g00342 434 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g00342 434 MobiDBLite consensus disorder prediction 415 434 - -
Vian5g00342 434 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Vian5g00342 434 PANTHER GEO13361P1-RELATED 51 324 - -
Vian5g00342 434 SMART rrm1_1 69 141 IPR000504 GO:0003723
Vian5g00342 434 SMART rrm1_1 161 233 IPR000504 GO:0003723
Vian5g00342 434 Gene3D - 149 270 IPR012677 -
Vian5g00342 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Vian5g00342 434 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Vian5g00342 434 MobiDBLite consensus disorder prediction 238 317 - -
Vian5g00342 434 MobiDBLite consensus disorder prediction 387 434 - -
Vian5g00342 434 FunFam UBP1-associated protein 2C isoform A 51 154 - -
Vian5g00342 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Vian5g00342 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00342 Vian-Chr5 7779115 7780419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00342 156 235 C2H2 Transcription Factor Family AT2G19380 38.750 2.40e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00342 K12741 - gmx:100776220 573.933