Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00340 ATGACTTGTTTCTTTAATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTTCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGTTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGTCTAGCACAAACACTTATTGGTGCAGGCCATAGTAACATCCAATTTAGTTGGCCCACAAGAAGGAACATTTGTGTAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCCCACATTATCCATAGAGACATAAAATCAAGCAATGTACTACTTGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATCCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGTTGGTTATCTTGCTCCTGAATATGCAATCCGAAATCAAGTCACAAGAAAATCAGATGTTTATAGCTTTGGAGTTCTATTATTAGAAATTGTTAGTGGGAGGCCTAACACAAATAGACGTTTACCTGTCGAAGAACGGTATCTTCTCACAAGGGCTTGGGATTTTTATGAGGCTGGAGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAAACTTCAATGTTGAGGAGGCAATCAGATTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGACCCTCTATGTCCATTGTGCTTGAAATGCTTTTAGGTGTAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCATGGAAACAAAATGGCAACTCTGAAGAGAATGGTAAACTTATGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCCGAAACCATGACCTCTTTTGCTACCATGACCTTCACAGCAATATGTGATCGAAGTAATTAA 1170 0.4085 MTCFFNLFRKKGSSSGTRLTGVDLDVSEIQNVNIYTYRELRSATEGFSPANKIGQGGFGEVYKGKLRNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGAGHSNIQFSWPTRRNICVGVARGLAFLHEEVRPHIIHRDIKSSNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEERYLLTRAWDFYEAGETEKLVDAFLDGNFNVEEAIRFCKIALLCTQDSPQLRPSMSIVLEMLLGVKDVNEENVTKPGMIFEFVEAKSAWKQNGNSEENGKLMLAEGKQDESSSSETMTSFATMTFTAICDRSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00340 389 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Vian5g00340 389 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Vian5g00340 389 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Vian5g00340 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vian5g00340 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00340 389 Gene3D Transferase(Phosphotransferase) domain 1 123 341 - -
Vian5g00340 389 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00340 389 CDD STKc_IRAK 53 318 - -
Vian5g00340 389 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00340 389 FunFam cold-responsive protein kinase 1 19 122 - -
Vian5g00340 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vian5g00340 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00340 Vian-Chr5 7737779 7741988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00340 19 320 Receptor kinase-like Gene Family AT1G53430 55.298 3.11e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00340 Pkinase 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00340 - - gmx:100801735 676.396