Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00337 ATGTCACATTCTGGGAAACCCTTGTCCGAGTCAGGGCTGAGCGACCGGTTGCGTGACTCATTGAGTTGCTCTGACGATACCAACAAGCCCGATTTCAGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGCCAGCAGTTCCACCACCACAGTGCACCGACGAGTAGTAACAGTAGCAGTAGTAGTGGCGGCTCGACCGGGTCGGTTCCGGGTAGGAGCAACCCGGTTTCGGGGAGATCCCACTCCGGTGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTGTCCAAACCGGGTCACCGGAGATCTAATTCTGGTCAGAGTTTGAGTCAGAGTCAGAGATCCCCGTCGTCGGCTGCCGTCAATTCGCCGCCGAATGTTCTCCCAGCCGGGAACATTTGCCCATCAGGGAGGGTTCTCAAGGCGGCGACGGTGGCGTCAGCGGCGAACCGGAGCTCCAGGAGTGATGTCTTGGGGTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGCAAGGGGGGTGGTGGGAACAGCAGTGGTGGTGATGCGTCGAGTGTTAAGATCGGCGGCGGTGATTCGGTGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTTCAAGAGAGGGCACTTTGGTGAGGCTTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCTGCTTACCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACCCTGTTTTTAAGGTTTTTTGCAACTGTGGTTTTGGCGGCAGTGTCAAGGCTGTTGGGTCTCTATGGTTGCGTTGCAGCTGCAACTGTGGTTGCATTTGTCCATGACATCAAGGATCTATTGACTGCAATTTTTAAACCTGGGTTAGGACAGGTTGAGGATGCAAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGGGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGGTGCTGAATCGTGTTTATCAGGGATTCCCAAAAGCGAGCCGCGTCCCAGTTCCTTATCACAGGCAAGATTTTTCGGGATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATAGACCCCAGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGGGGATGGTGGCTAGAGCTAGACTTCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGAGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAGTGAAGGATTATGAACTTTTGCGGAGAGAATTGCCAGATGACAATGATGTTGCCGAAAATCTGTTTCATGCACAAGTAGCACTAAAGAAATCTCGTGGGGAAGAAGTACGTAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTGCAATGTAAGCAGATATCTCCTTTCGTGGTTACACTCTGCAGTCGCTATCCATCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCCGCAGTTGCCACTGCTGAGAATGTTAGAGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGAAATGTTGGAACACTCTATTAGGCATTACAGCTTGTAG 2169 0.5002 MSHSGKPLSESGLSDRLRDSLSCSDDTNKPDFRELDLGSPVSTLRPRQQFHHHSAPTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSLSQSQRSPSSAAVNSPPNVLPAGNICPSGRVLKAATVASAANRSSRSDVLGSGTGNYGHGSIMRGGKGGGGNSSGGDASSVKIGGGDSVKRVDPEEVKRMGNEEFKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRFFATVVLAAVSRLLGLYGCVAAATVVAFVHDIKDLLTAIFKPGLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDGAESCLSGIPKSEPRPSSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVGMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVRNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPFVVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHEMLEHSIRHYSL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00337 722 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Vian5g00337 722 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Vian5g00337 722 SUPERFAMILY TPR-like 394 580 IPR011990 GO:0005515
Vian5g00337 722 CDD TRX_family 627 708 - -
Vian5g00337 722 MobiDBLite consensus disorder prediction 42 130 - -
Vian5g00337 722 Pfam Tetratricopeptide repeat 524 555 IPR001440 GO:0005515
Vian5g00337 722 MobiDBLite consensus disorder prediction 152 167 - -
Vian5g00337 722 Gene3D Tetratricopeptide repeat domain 330 608 IPR011990 GO:0005515
Vian5g00337 722 SUPERFAMILY Thioredoxin-like 525 720 IPR036249 -
Vian5g00337 722 Gene3D Tetratricopeptide repeat domain 205 289 IPR011990 GO:0005515
Vian5g00337 722 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 719 IPR044534 -
Vian5g00337 722 Pfam Thioredoxin 629 713 IPR013766 -
Vian5g00337 722 ProSiteProfiles TPR repeat profile. 522 555 IPR019734 GO:0005515
Vian5g00337 722 MobiDBLite consensus disorder prediction 1 137 - -
Vian5g00337 722 Pfam Tetratricopeptide repeat 213 273 - -
Vian5g00337 722 Gene3D Glutaredoxin 615 721 - -
Vian5g00337 722 MobiDBLite consensus disorder prediction 19 33 - -
Vian5g00337 722 MobiDBLite consensus disorder prediction 152 210 - -
Vian5g00337 722 Pfam Tetratricopeptide repeat 444 475 IPR019734 GO:0005515
Vian5g00337 722 Coils Coil 562 582 - -
Vian5g00337 722 FunFam TPR repeat-containing thioredoxin TTL4 614 721 - -
Vian5g00337 722 SMART tpr_5 556 589 IPR019734 GO:0005515
Vian5g00337 722 SMART tpr_5 488 521 IPR019734 GO:0005515
Vian5g00337 722 SMART tpr_5 207 240 IPR019734 GO:0005515
Vian5g00337 722 SMART tpr_5 522 555 IPR019734 GO:0005515
Vian5g00337 722 SMART tpr_5 241 274 IPR019734 GO:0005515
Vian5g00337 722 SMART tpr_5 442 475 IPR019734 GO:0005515
Vian5g00337 722 SUPERFAMILY TPR-like 208 285 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00337 Vian-Chr5 7673295 7676453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00337 486 632 U-box Gene Family AT3G07370 28.261 5.66e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00337 - - gmx:100805790 1080.09