Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00321 ATGGATCTTCAAAAACCTCTATACCTCTTCTTGCTTCTCCTCACTCTTCTCTCAAGCTCCCAAGCCAAGAAATTCAACGTTGGTGGAAGCCAAGGCTGGGTTCCAAATCCTTCCGAGAGTTACAATAACTGGGCTGGAAGAAACCGATTCCAAATCAATGACACAATAGTTTTCAACTACAAGAAGGGTTCGGACTCGGTGTTGGAAGTGAAGAAGGAAGATTATGACAAGTGCAACAAGACCAACCCAATCAAGAAGTTCGAAAACGGTGACACTGAGTTCAAGTTTGATCGATCAGGACCATTTTACTTCATTAGTGGAAATGATGGAAACTGTGAAAAGGGTCAGAAATTGATTGTTGTTGTTTTATCCCCTAGAAAATCGCCATCACCTTCACCATCACCTTCACTATCACCATTGTTGCCACCAAAAGATATGCCTTCACCCTCACCAAAGCCAAACCCACCAATCGTTTCGCCTTCCTCTCCACCGTCCCCAGCGGTTCAACCTCCATCAAACTCAATATCTCCGAAACCGGCCAACGGGCCTTCTGCGGCAGCTCCGGGACCTGAAAACTGGTATCCAGCGACAGCTCCGGCACCTGAAACAATGTATCCGGTGACTTCTCCTCCGGCACCGCCACCGGAGACGGGAACTCCACCGCCGTTTCCGGCGGAGCCAATTTCTCCACCGCAGTCATCCGCCGGGCCAACTTCCCCACCGCAGTTGCCGGCGGGGCCAACTTCTCCACCGCAGTCGGAAACGGCGCCATCACCGACGAATGGTGGTTTTGCTAAGGCTCCTTCAAACGCTTTGGTGTATTTCGTTACAATTGTCGTTGGTGGTGTTATGTTGCATTATTGA 864 0.4977 MDLQKPLYLFLLLLTLLSSSQAKKFNVGGSQGWVPNPSESYNNWAGRNRFQINDTIVFNYKKGSDSVLEVKKEDYDKCNKTNPIKKFENGDTEFKFDRSGPFYFISGNDGNCEKGQKLIVVVLSPRKSPSPSPSPSLSPLLPPKDMPSPSPKPNPPIVSPSSPPSPAVQPPSNSISPKPANGPSAAAPGPENWYPATAPAPETMYPVTSPPAPPPETGTPPPFPAEPISPPQSSAGPTSPPQLPAGPTSPPQSETAPSPTNGGFAKAPSNALVYFVTIVVGGVMLHY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00321 287 PANTHER BLUE COPPER PROTEIN 24 167 IPR039391 GO:0009055
Vian5g00321 287 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
Vian5g00321 287 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Vian5g00321 287 MobiDBLite consensus disorder prediction 204 254 - -
Vian5g00321 287 MobiDBLite consensus disorder prediction 125 267 - -
Vian5g00321 287 MobiDBLite consensus disorder prediction 128 177 - -
Vian5g00321 287 FunFam Early nodulin-like protein 1 22 127 - -
Vian5g00321 287 CDD OsENODL1_like 23 122 IPR041846 -
Vian5g00321 287 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Vian5g00321 287 Gene3D - 21 127 IPR008972 -
Vian5g00321 287 PRINTS Proline rich extensin signature 183 204 - -
Vian5g00321 287 PRINTS Proline rich extensin signature 168 180 - -
Vian5g00321 287 PRINTS Proline rich extensin signature 148 164 - -
Vian5g00321 287 PRINTS Proline rich extensin signature 127 139 - -
Vian5g00321 287 PRINTS Proline rich extensin signature 204 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00321 Vian-Chr5 7206862 7207865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00321 3 177 Phytocyanin Superfamily AT5G53870 53.297 2.49e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00321 - - vra:106755782 403.675