Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00310 ATGGAATCTAAACACTTTGACTCCAATGGGGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCAGCTGAGCCAACAGTCTCTACGTGTGAAAATGATTGCTTTGATTGCAATATTTGTTTGGAAGCAGCATATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAGTGGCTGCATGTTCAAAACTCATCTGTTGAACCAGACCAGCCGCAGACATGCCCAGTTTGTAAATCTAAGATCTCTCACACCTTAGTAGTCCCTCTCTATGGCCGTGGAACATCAAATTCAGAATCAAAGGCCAAGAAACTCCAGATGAGTCTTGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGATTTGTTAACTTCTTCTGCTCGTGCACCAGCACATTCTGGCCACCAACTTCATCCAAGTTATTTCCAATCACAGCCAAGACCATTTCATTATCAGCAGTACTTCCCTCACCTCTATGAAAGCTATGGCACCAATGGATTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGTGAGATGGTCTTGACAAGAATTTTTGGGGTCTCAGATGCAAACTTGTTTTCATACCCACATAATGGAAATGGCAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAAGTCCCTGAACAGACTTTCCATCTTTCTCCTATATGGAGCAGTTAGTAAGAGGTATGGTGAAGAAGAATTCTTAGAGTTTCAAGAGGCTTCAAACGTGACCATGAAAATATGTTCTCTCCCTTCCCTCCTTTGTGTTGAATCAATTTGTATTGGAACTTGTTTATTCCTAACTGCTAATGTGGTTTTGATTTTGATGTCTTAA 891 0.4119 MESKHFDSNGEVSLKQKSKSISAEPTVSTCENDCFDCNICLEAAYDPVVTLCGHLYCWPCIYKWLHVQNSSVEPDQPQTCPVCKSKISHTLVVPLYGRGTSNSESKAKKLQMSLGIPHRPPPYNLNDLLTSSARAPAHSGHQLHPSYFQSQPRPFHYQQYFPHLYESYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGSPRMRRQEMQIDKSLNRLSIFLLYGAVSKRYGEEEFLEFQEASNVTMKICSLPSLLCVESICIGTCLFLTANVVLILMS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00310 296 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Vian5g00310 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 135 IPR013083 -
Vian5g00310 296 SUPERFAMILY RING/U-box 33 96 - -
Vian5g00310 296 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Vian5g00310 296 SMART ring_2 37 83 IPR001841 -
Vian5g00310 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 241 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vian5g00310 296 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00310 Vian-Chr5 6791246 6792392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00310 2 236 C3H Transcription Factor Family AT4G27470 45.833 4.25e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00310 K10666 - gmx:100817526 396.741