Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00301 ATGGGGGATCTCTTCTTCTCCTTCAAGACCCAGGAACACGGTCACCAGAGAGCAAAACACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACGATCCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAGCCGGAGCAGAAATTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTCGACCATGGTGTGCTTCAGGCAAAGCTTGAGAATGTGATGGCCGAAAAGAAGCAGCTCGAGAAAGATGTCGAAAGGCTCAAAGCTGACCTCAAGAAAGCCCAAGAGATGCTGCTAATTGGTGATGTCGTCAAAGGTGGAAAAAATAGCAATTATAATAATGGTAATAACAATAAAAATAATAATAATAATAATAATAATAATAATGGTTCTTGCTGTGAGTTTTCAACTTCTTTTGAAGAGGGAGGGAGTTCAGGTGTGGTGCTTGATGATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTGTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA 612 0.4363 MGDLFFSFKTQEHGHQRAKHNKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKKAQEMLLIGDVVKGGKNSNYNNGNNNKNNNNNNNNNNGSCCEFSTSFEEGGSSGVVLDDHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00301 203 Gene3D - 14 81 - -
Vian5g00301 203 Coils Coil 82 116 - -
Vian5g00301 203 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Vian5g00301 203 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vian5g00301 203 FunFam Homeobox-leucine zipper protein ATHB-52 12 78 - -
Vian5g00301 203 Pfam Homeodomain 21 74 IPR001356 GO:0003677
Vian5g00301 203 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 144 IPR045224 GO:0003700
Vian5g00301 203 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Vian5g00301 203 SMART HOX_1 18 80 IPR001356 GO:0003677
Vian5g00301 203 CDD homeodomain 19 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00301 Vian-Chr5 6499246 6499857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00301 12 197 Homeobox Transcription Factor Family AT5G53980 40.323 1.04e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian5g00301 Homeodomain 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00301 - - ccaj:109788811 301.597