Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00293 ATGGCATTAACTTCTTCTACTTCGACAAGCTTGACATTATTCCTTTGCCTCTGTGTGTTTTGTGTTAATGCAGTCACCTACAGAGAAATTTTGCAAACAGGACAATCACTGGGAACCTCAGACTCGGTTGTTTCTGACAGCGGGAAGTTCGAATTGTGTTTTTTCACCAGAGTCAGAGATAACTCAACCAAGTACTACGTTGGTATACGGTATAAAAGGGTTCCAAACGACAAGAACAAGGTTGTGTGGGTTGCAAACCGAGACTACGCACTTGAAACATCCTCAGCAGTTCTTACCTTTCAACCTGGTGGAAATTTTGTCATAATGGATGGACAAGTCACATACCGTGTCAACAAGGTTTCAAATAATTTCAGTATGTATGCCATGCTCTTGGATTCAGGAAACTTGATACTGCTGAAAACCTCAAATAAACAGATTTTGTGGCAGAGTTTTGATCATCCGACGGACACCCTTTTACCCGGAATGAAACTAGGACATGATAAAGGAAACACTTGGTCATTGCAATCATGGAGAAGTGCAGATGACCCTGCCCCAGGAGCTTTTTCCCTCGAATATGATTTGGGCAGGGTCAGCCTAATCATCAACAATGGTTCTAATGCGTTCTGGATTGACGACCACTACAATGATACTATTGGTAATTTTATTCGCCGAAGTGGTATGTCTATGAACAGCTATTTCAGTTTGCCAGTTGGTAATGACTCTAGGCTGGTACTAGAAGTGTCTGGTGAGCTCAACCAGGAATATTGGTCTGATGAACAACAACATTGGGTTTCTATTCAGTCATCCAAGTGTGCTAATAACTCGTGTGGAGCCTTTTCCATCTGTAACCCGAAAGCTCGTGACCCTTGTGACTGTCTTCATGGTTTCAGGCCCTCTGATGCTGATTCTTGGAACAATGGGAACAAATCTGCTGGCTGTGTGAGGAACAAAGACTTATCGCCCTGCAGTAACGGTGCTGAATCCAACGATAAATTCAAGCAACTTTATAATGTCAAATCACCAACTTTGGACAGTCTCAGGAATATTAGTACAACAGAAGAGTGTGAAAGTACTTGTTCTAGAAACTGTTCTTGCGTTGCTTTCGCTTACTATTTGAACCGTGATTGCCAGTTGTGGCTTGGTTCGGTATTGAATTTAAAGAACGTCTCAACAGATGTGGACATTTCTGATGATAGCAGTCCAATTTTTTACCTAAGACTTGCTGCCTCAGAATTCGATATTTCTGGTTCGAACACAACAAGAGCAAAAGAACCGGGATATACTATTAGCAAAAATGTAATTCTGATTGTTATATTGATCTCCTTTCTAGCTTTTCTTATATTGGGCCTTTTAGTTTACTGGATTAGAAAGAAGAGGAGAAAAGGCGAAGATTTGCTCCATTTTGATATAAGCATCAGCATGAAAGTTGAAGATTCTGAGCTTACTGAATCAGATAGGAGTGCCAAAGTCAAGAAGGAAGTGAAATTGCCTTTGTTCAGTTTCGAGAGTGTTGCAGCTGCTACTAATAATTTCTCAGATGAAAATAAACTTGGTGAGGGCGGCTTTGGACCCGTTTACAAGGGTACATTATTTAATGGGGATGAGGTTGCCGTGAAAAGACTGTCACGGAGATCTGGTCAAGGATGGGAAGAGTTGAGAAATGAAGCTTTGTTAATTGCAAAACTCCAACACAACAATCTTGTTAGACTTCTTGGTTGCTGCATTGATCGAAATGAAAAGATGCTCATTTATGAGTTTATGCCTAATAAAAGTTTGGATCTTTTCCTTTTTGATGCTACAAAGAAACAGATGCTAGATTGGGGAACAAGAATCAGAATAATCGATGGGATTGCCCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATTAATCCCAAAATATCAGATTTTGGATTGGCAAAAATATTTGGTGATAATGAGCTTCAAGCAAATACAAACCGAATAGTTGGAACATATGGTTACATGGCTCCTGAATATGCTCTAGAAGGACTTTTCTCAGTAAAATCTGACGTGTTTAGTTTTGGGGTCCTTTTGTTGGAGATTGTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACGAGTTCCTTCAATCTTCTTGGATATGCTTGGGATCTTTGGACGAGAAATTCAGGACTGGATCTAATGGATAGTGCATTAGATGACAGTGATAATTTAAGTAATAACAGTCTGCATACTGTGCCAAGATATGTGAACATAGGACTTCTTTGCGTTCAAGAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGGAATGACACTGTGCCCCTTCCTTCTCCTAAACCACCTGCATTCCTTAAGGTCAGAGGTGATCATAGTTCATCATTGCCCTCCTCCTCCACAGAAAGATTTTCAGTGAATGTTATGACAGATACAATTCTGGAAGCAAGATGA 2502 0.4013 MALTSSTSTSLTLFLCLCVFCVNAVTYREILQTGQSLGTSDSVVSDSGKFELCFFTRVRDNSTKYYVGIRYKRVPNDKNKVVWVANRDYALETSSAVLTFQPGGNFVIMDGQVTYRVNKVSNNFSMYAMLLDSGNLILLKTSNKQILWQSFDHPTDTLLPGMKLGHDKGNTWSLQSWRSADDPAPGAFSLEYDLGRVSLIINNGSNAFWIDDHYNDTIGNFIRRSGMSMNSYFSLPVGNDSRLVLEVSGELNQEYWSDEQQHWVSIQSSKCANNSCGAFSICNPKARDPCDCLHGFRPSDADSWNNGNKSAGCVRNKDLSPCSNGAESNDKFKQLYNVKSPTLDSLRNISTTEECESTCSRNCSCVAFAYYLNRDCQLWLGSVLNLKNVSTDVDISDDSSPIFYLRLAASEFDISGSNTTRAKEPGYTISKNVILIVILISFLAFLILGLLVYWIRKKRRKGEDLLHFDISISMKVEDSELTESDRSAKVKKEVKLPLFSFESVAAATNNFSDENKLGEGGFGPVYKGTLFNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDLFLFDATKKQMLDWGTRIRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDSHINPKISDFGLAKIFGDNELQANTNRIVGTYGYMAPEYALEGLFSVKSDVFSFGVLLLEIVSGKKNTGFYQTSSFNLLGYAWDLWTRNSGLDLMDSALDDSDNLSNNSLHTVPRYVNIGLLCVQESPEDRPTMSDVVSMIGNDTVPLPSPKPPAFLKVRGDHSSSLPSSSTERFSVNVMTDTILEAR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00293 833 CDD STKc_IRAK 517 786 - -
Vian5g00293 833 Pfam D-mannose binding lectin 81 178 IPR001480 -
Vian5g00293 833 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
Vian5g00293 833 Gene3D Transferase(Phosphotransferase) domain 1 587 791 - -
Vian5g00293 833 FunFam Uncharacterized protein 486 586 - -
Vian5g00293 833 Gene3D - 23 152 IPR036426 -
Vian5g00293 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 183 IPR036426 -
Vian5g00293 833 Pfam PAN-like domain 322 385 IPR003609 -
Vian5g00293 833 ProSiteProfiles Protein kinase domain profile. 511 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00293 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Vian5g00293 833 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Vian5g00293 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 121 809 - -
Vian5g00293 833 CDD B_lectin 28 154 IPR001480 -
Vian5g00293 833 Pfam Domain of unknown function (DUF3403) 788 833 IPR021820 GO:0004674
Vian5g00293 833 SMART serkin_6 511 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00293 833 CDD PAN_AP_plant 322 408 - -
Vian5g00293 833 SUPERFAMILY Protein kinase-like (PK-like) 497 819 IPR011009 -
Vian5g00293 833 Pfam Protein tyrosine and serine/threonine kinase 514 785 IPR001245 GO:0004672|GO:0006468
Vian5g00293 833 Pfam S-locus glycoprotein domain 219 299 IPR000858 GO:0048544
Vian5g00293 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Vian5g00293 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 794 - -
Vian5g00293 833 SMART ntp_6 327 399 IPR003609 -
Vian5g00293 833 ProSiteProfiles PAN/Apple domain profile. 322 408 IPR003609 -
Vian5g00293 833 SMART blect_4 28 154 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00293 Vian-Chr5 6392724 6396641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00293 433 802 Receptor kinase-like Gene Family AT4G23190 51.604 1.29e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00293 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00293 - - pvu:PHAVU_011G149500g 1189.48