Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00290 ATGAAGAATAACACTTATTTTAGGGATAACTCTAACAGGGAATCTATGATGGTGGCTCACTCTAACCATTTCATTCGAGGAAACTATTTGGGTGATCAACACTTTCACTCTAACATTAACAATGGTGATGGTGTTCATGCTTTGGATTGGTATCACTCTCTTCCAATGTCATATGCAGAAGCTCCAACTGCCGGTGCTAATGTAAGGAGAAGATATAATGATAGAGCTGGAAGGAGAAGGTGCCACAGATTTCTCCATAGGCCATACCGTCATGTAGAAGCTTCAACTGCCAGTGCTAATGTAAGGAGAAGATATAATGATAGAGCTGGAAGGAGAAGGTGCCACAGATTTCAACATAGGCCATACCGTCATGTAGAAGCTCCAACTGCCAGTGCTAATGTAAGGAGAAGATATAATGATAGAGCTGGAAGGAGAAGGTGCCACCGATTTCAACATAGGCCATACCGTCATGCACAACCTGTGCAAGAGATCCGATGTCAGTTTAACTTTCATTCCCAACTAAATAGAGTTCCAACATCAACAAATCATTCAAGTTCTTCAATGCCCATACAAAATGCACCTCGTAGAGACAACATGCATAACCATCATCCTCCTGCACATCGTGAATTTCCTTCATATATGCTCATGGACACTGATGTACAGGAATTTCCTTCGTATATGATCATGGACACTGATGACATGTCATATGAGACATTTTCTAATGTTCAGGAACCTTCTTCATTAGGTGACCCTCACAATGATATACGCTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAGTTAGGTGAAAGGATCAATGACAACTCGGAAAGGGGTTTGTCTGAAGACATTATTGTAAGACAAATGCAGACAAAAAGTTGTCTACTACCTGAGAACTTCAAGGATCAGGAAATTGATATTTGCATCATATGTCAGGATGAATACAAAAATAAAGAAGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTATAAAGAGATGGTTACATAAGAAAAATGTCTGTCCCATGTGCAAATCAAAAGCATTGACCATATATAGAAGCGAAAATTAG 1089 0.3958 MKNNTYFRDNSNRESMMVAHSNHFIRGNYLGDQHFHSNINNGDGVHALDWYHSLPMSYAEAPTAGANVRRRYNDRAGRRRCHRFLHRPYRHVEASTASANVRRRYNDRAGRRRCHRFQHRPYRHVEAPTASANVRRRYNDRAGRRRCHRFQHRPYRHAQPVQEIRCQFNFHSQLNRVPTSTNHSSSSMPIQNAPRRDNMHNHHPPAHREFPSYMLMDTDVQEFPSYMIMDTDDMSYETFSNVQEPSSLGDPHNDIRLDIDDMSYEELLELGERINDNSERGLSEDIIVRQMQTKSCLLPENFKDQEIDICIICQDEYKNKEEIGILQCGHEYHADCIKRWLHKKNVCPMCKSKALTIYRSEN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00290 362 MobiDBLite consensus disorder prediction 177 194 - -
Vian5g00290 362 Pfam Ring finger domain 309 351 IPR001841 -
Vian5g00290 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 360 IPR013083 -
Vian5g00290 362 MobiDBLite consensus disorder prediction 177 196 - -
Vian5g00290 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 355 IPR045191 GO:0061630
Vian5g00290 362 SMART ring_2 310 350 IPR001841 -
Vian5g00290 362 SUPERFAMILY RING/U-box 309 356 - -
Vian5g00290 362 CDD RING-H2_RNF24-like 308 354 - -
Vian5g00290 362 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00290 Vian-Chr5 6367209 6370501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00290 226 355 C3H Transcription Factor Family AT2G15530 45.185 9.26e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00290 K19041 - vra:106752786 228.794