Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00288 ATGTCTACGATTTCTTATTGTTCCTTAGACAGTTTAGCAGTGAGCGAATCCATCCAAGATATTAAGAACGAGACTTTGGTTTCAGCAGGTGGAATTACTGAACTGGGTTTCTTCAGTCCACGAAATTCAGCAAGAAGATATTTGGGAATATGGTACACAAATGTATCCCCTTTCACTGTGGTATGGGTGGCAAACCGAAATACACCTCTTGAGAATAATTCAGGAGTTCTCAAACTCAACCAAAAAGGGGTTCTTGAGCTATTCAATGGCACAAACAACATCATTTGGTCATCACCCAACAGATCAAGCAATACAGTGAATGATCCAATTACTCGTCTTTTGGATTCTGGAAATTTTGTAGTGAGAAATGGAGGGGAAACAAAGGAGGATAGCATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACACAGATGCCAGAAATGAAGTTTGGATGGAACCTAGAGACTGGTGTGGAAAGATATATAGCATCTTGGAAAAGTGATGAGGATCCTGCAGAGGGAGAATATGTTATAAAAGTGGATCTTAGAGGATATCCTCAAATAATAAAGTTCAAGGGAACTGATATAAAAGCAAGAGCAGGGCCATGGAATGGCTTGTCTCTGGTTGGAAATCCTATTCCAGCTCGTGGTACGTCTGTAAAATTTGTGTTCAATGAAAAAGAGGTGTATTTTTGGTACAGTCTTAGTGATGAATTGGACTTCTTTGTGTACACACTGACCCCTTCAGGCACAGGACAAAGTTGGTTTTGGACAACTGAAACAAGGACGAGGCAAGTGGTCTCAAGTGGGGAGGAAGATCAATGCGAGAATTATGCCTTCTGTGGTGCAAATTCTGTATGCATTTATGATGGTAACTTTCCTATTTGTGAATGCCTAAGAGGGTATGTTCCTAAGTTTCCTGATGAGTGGAATATATCAATTTGGCACAATGGCTGTGTGCCAAGGAATAAATCTAACTGCACGAACATATACACAGATGGCTTCTTGAAATACAAGCACATGAAGTTGCCAGACACTTCTTCCTCATGGTTTGATGCAACCATGAACCTTGATGAATGTATGAAGTTGTGCATTAGAAACTGTTCTTGTACAGCATGTGCAAATTTAGATGTTCGTGACGAAGGAAGTGGTTGTCTGATTTGGTTTAATGATCTGGTTGACATGAGGAATTTCTCTCAGTGGGGACAAGACTTTTACATCAGAGTCCCTGCTTCCGAATTAGATCATGCTGGCCATGGAAAAATCACCATAAAGATAGCAGCAATTACAGTTGGTGTGATTATTTTCGGATTAGTCACATGTGCATGCATAATTATAAGAAAAAATCCAGGGATAGCTAGAAAACTTTACAGCAAGCATAAGCAGAAAAAGGAAGACCTTGAATTTCCAACTTTCGATTTTCTGGTCATTGCTAATGCTACCCAAAACTTTTCAACCAAAAACAAGCTTGGTGAAGGTGGTTTTGGACCAGTATACAAGGGCATACTGTTAGATGGACAAGAGTTAGCAGTGAAAAGACTCGCAGAGAATTCCGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTTGCTTTGATTGCAAAACTTCAGCACCACGAAACCAAGAGGAAGTTGGTAGATTGGCGCATGAGATTCAACATTATCAGTGGCATTGCTCGAGGACTTCTCTATCTGCATCAAGATTCCAGACTAAGGATTATTCACAGAGATCTTAAAACTAGCAATATTTTACTAGACACAAATATGGATCCCAAAATAGCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGGAAAGACTCATAGGGTGGCTGGAACATATGGATACATGCCTCCTGAGTATGCTGCACGTGGACATTTTTCAGTGAAATCAGATGTGTTTAGTTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAAAACAACAATAATCTTCTTGGCCATGCATGGAGATTATGGACTGAAGAGAGAGCACTCGAACTGCTTGATGAATTGATAGGAGAACAATGCCTAGAGTCTGAAGTCACTCGATGCATACAGGTCGGGCTATTGTGTGTGCAACAAAGACCAAACGACAGACCAGACATGTCATCGGTGGTTCTAATGTTGAATGGTGAAAAATCATTACCAAAGCCAAAGGTTCCTGGCTTTTACACTGAATCAGATGTTACAACCGAAACAAATTCTTCATCAGAAAATCACACACTATGCTCAGTTAATGAGCTTTCCATCACAATGATAGATGCAAGATAG 2310 0.4026 MSTISYCSLDSLAVSESIQDIKNETLVSAGGITELGFFSPRNSARRYLGIWYTNVSPFTVVWVANRNTPLENNSGVLKLNQKGVLELFNGTNNIIWSSPNRSSNTVNDPITRLLDSGNFVVRNGGETKEDSILWQSFDYPGDTQMPEMKFGWNLETGVERYIASWKSDEDPAEGEYVIKVDLRGYPQIIKFKGTDIKARAGPWNGLSLVGNPIPARGTSVKFVFNEKEVYFWYSLSDELDFFVYTLTPSGTGQSWFWTTETRTRQVVSSGEEDQCENYAFCGANSVCIYDGNFPICECLRGYVPKFPDEWNISIWHNGCVPRNKSNCTNIYTDGFLKYKHMKLPDTSSSWFDATMNLDECMKLCIRNCSCTACANLDVRDEGSGCLIWFNDLVDMRNFSQWGQDFYIRVPASELDHAGHGKITIKIAAITVGVIIFGLVTCACIIIRKNPGIARKLYSKHKQKKEDLEFPTFDFLVIANATQNFSTKNKLGEGGFGPVYKGILLDGQELAVKRLAENSGQGLEEFKNEVALIAKLQHHETKRKLVDWRMRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDTNMDPKIADFGLARSFLGDQVEGKTHRVAGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPENNNNLLGHAWRLWTEERALELLDELIGEQCLESEVTRCIQVGLLCVQQRPNDRPDMSSVVLMLNGEKSLPKPKVPGFYTESDVTTETNSSSENHTLCSVNELSITMIDAR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00288 769 PIRSF SRK 1 542 IPR024171 GO:0004674
Vian5g00288 769 PIRSF SRK 538 769 IPR024171 GO:0004674
Vian5g00288 769 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
Vian5g00288 769 Gene3D - 6 137 IPR036426 -
Vian5g00288 769 ProSiteProfiles EGF-like domain profile. 271 308 IPR000742 -
Vian5g00288 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Vian5g00288 769 Pfam D-mannose binding lectin 59 166 IPR001480 -
Vian5g00288 769 Pfam PAN-like domain 331 395 IPR003609 -
Vian5g00288 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 4 137 - -
Vian5g00288 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 409 - -
Vian5g00288 769 SUPERFAMILY Protein kinase-like (PK-like) 467 737 IPR011009 -
Vian5g00288 769 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 171 IPR036426 -
Vian5g00288 769 CDD PAN_AP_plant 324 410 - -
Vian5g00288 769 SMART ntp_6 330 409 IPR003609 -
Vian5g00288 769 SMART serkin_6 484 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00288 769 Pfam Domain of unknown function (DUF3403) 727 769 IPR021820 GO:0004674
Vian5g00288 769 Pfam Protein kinase domain 548 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00288 769 SMART blect_4 17 140 IPR001480 -
Vian5g00288 769 CDD B_lectin 23 140 IPR001480 -
Vian5g00288 769 ProSiteProfiles Bulb-type lectin domain profile. 11 134 IPR001480 -
Vian5g00288 769 Gene3D Phosphorylase Kinase; domain 1 464 537 - -
Vian5g00288 769 Gene3D Transferase(Phosphotransferase) domain 1 538 732 - -
Vian5g00288 769 Gene3D Hepatocyte Growth Factor 326 406 - -
Vian5g00288 769 ProSiteProfiles PAN/Apple domain profile. 327 410 IPR003609 -
Vian5g00288 769 FunFam - 533 731 - -
Vian5g00288 769 ProSiteProfiles Protein kinase domain profile. 484 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00288 769 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00288 Vian-Chr5 6301213 6304175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00288 454 769 Receptor kinase-like Gene Family AT4G11480 47.514 3.86e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00288 Pkinase 3.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00288 - - gmx:100815430 1198.34