Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00283 ATGGAGGCCAGGACTCTGGAGAGGAAGAGATCACTGCTTGAGAGGGTCAGAAAGAATGTGGAAGAGGAACTGGAGAATGAAGTTGAGGAGGAGGATGAAAGTGGAGCTACTCTCACTGAAGAAGAGAAAAAAAGAGGGCTTGGTAGCAGCAATAGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGCTGCTGCTGCTGCTGGAGGAGTTTCTCCACCTTCATGTCAAGCTGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTCTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGTCTGAGACAGAGGTTCTGCCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAGGCTGCCAATGAGAGCAGCAGCCACAGCAGCAAAGGCCATCACCACCCTAAGGAAACAACACAGTGCAGAATTCAGATGAACCTTCCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 576 0.5208 MEARTLERKRSLLERVRKNVEEELENEVEEEDESGATLTEEEKKRGLGSSNSGGGRRGSSGAAAAAGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANESSSHSSKGHHHPKETTQCRIQMNLPGSSGYKSFNIR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00283 191 SUPERFAMILY SBT domain 72 152 IPR036893 GO:0003677|GO:0005634
Vian5g00283 191 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Vian5g00283 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 162 IPR044817 GO:0003677
Vian5g00283 191 MobiDBLite consensus disorder prediction 138 191 - -
Vian5g00283 191 MobiDBLite consensus disorder prediction 172 191 - -
Vian5g00283 191 FunFam Squamosa promoter-binding-like protein 14 66 135 - -
Vian5g00283 191 MobiDBLite consensus disorder prediction 1 77 - -
Vian5g00283 191 MobiDBLite consensus disorder prediction 144 171 - -
Vian5g00283 191 MobiDBLite consensus disorder prediction 1 23 - -
Vian5g00283 191 Pfam SBP domain 74 147 IPR004333 GO:0003677
Vian5g00283 191 Coils Coil 3 41 - -
Vian5g00283 191 Gene3D - 64 135 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00283 Vian-Chr5 6187094 6188130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00283 61 151 SBP-box Gene Family AT2G33810 67.033 1.65e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian5g00283 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00283 - - vra:106755766 261.536