Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00278 ATGGTGGGCTCAGGAACAGCAACAGATAGGAGCAAAGAAGCTATTGGGATGATGGCCCTTCACGAGGCCCTCAGAACTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGACCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGATAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGGGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTCAGCAAAATGTCGATTCAGTTATATAATTATGGAGAAGGGTGGGTACTGGGTAGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAGTGTGAGCCTAATATGACCAACTACTGGCAAAGCTCCTTTGATGCTCTACCTCCTGAATGGATAGAACAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAGCTTGGTTCTTGCAAGATTATTCCTGAAGACCTTCATTTTGTGCTAAGAATGAGACACACTTTTGAATCTCTAGGCTACCAATCAGGATTCTACCTCTCACAACTCTTCTCTTCAACTAGGAACACTTCCTCTTCTACCTCCCTTCCTTCAAAACCATCCACCTTTCCAATCAGGCCACCCCCTCCAACCCTCAACTGGGGTCAGAGGCCAATTGGGTCTGCTACTTCATTGCTACCCTCTCCAACTTTTCAACATGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAAACTCAAATGTTCCTCATGCCTCATTCATCATCAGAGCATGTGAGAATGGGAGACATGATGAGGGAGCATGAGAATGACATAAAGTGGCCAAATGGATTATCGATCTTCAATGTACTCACTGGAAGATCTGATGATGCTAAACTCTTGTTCAATCAAGAGAGTGCAAATCCAACCTCAGTAGTGCAGAATGCTAGTGTGGCAAACCCGAATGAGTTCTTGAGCTTGGATGGCCACTCTGAAGGGACAAGGAAAGTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCCAAAGTGGTTTCATCTTCATCCTCTACTTCTATGGATCACCATCATCAACAAGCAAGTGAGGAGTATAGGAATTCAGGTGGCATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA 1212 0.462 MVGSGTATDRSKEAIGMMALHEALRTVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGWVLGRLMGKVTSDKCHKWVFKEPTECEPNMTNYWQSSFDALPPEWIEQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLPSKPSTFPIRPPPPTLNWGQRPIGSATSLLPSPTFQHAARMGFPQAKDETQMFLMPHSSSEHVRMGDMMREHENDIKWPNGLSIFNVLTGRSDDAKLLFNQESANPTSVVQNASVANPNEFLSLDGHSEGTRKVDKFKRCFTLPAKVVSSSSSTSMDHHHQQASEEYRNSGGMYQDVMETFLE 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00278 403 PANTHER GB|AAF34833.1 1 403 IPR044170 -
Vian5g00278 403 MobiDBLite consensus disorder prediction 370 390 - -
Vian5g00278 403 MobiDBLite consensus disorder prediction 214 237 - -
Vian5g00278 403 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 74 IPR025610 -
Vian5g00278 403 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 89 193 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00278 Vian-Chr5 6135961 6138759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00278 21 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 30.097 9.99e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00278 - - gmx:100789006 691.419