Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00265 ATGATGGTGAGGTTCAACTTGGTCATGATTTGCTTTTCTGCCATGTTATATGCTGTTACTGCATTGAACACTGATGGGGTGACTCTTCTGTCACTCCAGAAGCATTGGACATTTGTTCCTCCTTCCATAAACTTGAGTTGGAATGCTTCTGATTCCACTCCATGCTCTTGGTTAGGAGTCCAGTGTGACAATAACCACAGTACAATCTATCTTAACCTCTCTGGAAACTCAATTTCAGGTCTTTTGGGACCTGAAATAGGACACTTGAGTCACTTGCAAACACTTGACTTGTCCTCAAACAACTTCTCAGGGAACATACCTCCTGAGTTAGGAAATTGTAGTCTGCTTCAGAACCTGGACCTTTCTTATAACAGTATCACAGGAAACATACCTGATAGTTTGAGAAACTTGCAGAATTTAGTCTCTTTCAGTAGTATGTACAATGGGATAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTGAACACTTGGAAGATCTTCTCCTGAACCAAAACTCTTTGTCTGGTTCCATTCCAATGAATGTTGGGAACGGTACAGAAATTGTGACACTGTATCTGGATCGTAATCAGTTGTCAGGAATGATTCCACCGTCCATTGGAAACTGCAGTAAATTAGTGGAACTATATTTGGACTATAACCAGTTGCATGGAGTTCTACCTGATAGTATTAACAATCTTCAAAGTGTTGTTAAGTTGAGTTTCAGTAATAATAGACTTGAGGGAACCATTCCCTTATTGGGATCTAGCACATGTAAAACTTTACAATATTTGGACCTGTCAGTGAACAAATTTAGTGGAGGCATACCTTCAACCTTGGGGAATTGCAGTGGATTGACAGAAATTTATGCTTTAAACACAAGTTTAGGAGGAAGCATTCCATCCTCCTTAGGCCAATTAACACAACTTTCTGTTCTTCGCCTTGAAACCAATCATTTGTCTGGTCAAATACCTTCAGAAATTGGTAATTGTAGGTCATTAAAATACTTGATGTTGAATAACAATGAACTTGAGGGAGAAATTCCAAGTGAATTAGGAAAGCTAAGTCAGTTGCAAGATCTTAGACTTCATTTCAACAATTTGACAGGTGGAATTCCAGTGAGCATTTGGAAAATTTCCAGCCTTCAGCAACTGCATGTTTATTTCAATAACCTTTCTGGTGAGGTGCCTTTAGAATTGGCAGAACTCAAACAACTGAGAAAACTTTGCTTGTACCACAATCAGTTCTCTGGAGTCATTCCTCAAAACTTAGGAATCAATAGCAGTTTAGTGGAGATGGATCTCTCATATAATCTTTTCACTGGAAACATCCCAGCTAATCTCTGCTTTGGACAACAATTACTTAGGCTAGTCCTGGCTTCAAATCAATTGCAAGGTGGTATTCCTCCTGACATGGGAAGATGCACAACACTTACTAGGTTAAGGCTTGATGGAAACAACTTAAGTGGACCCTTACCTGATTTTGCAAGCAATTGTAGTCTCACCTACATGGACTTCAGTGGGAACAATATCAATGGAACAATTCCATCAAGTTTGGGAAACTGCAAAAATCTTACTACTGTTATTTTATCTCACAACAATCTTTCTGGGATCATACCCTTTGGGCTAGGAAACCTTGTGAACCTTCAAAGGTTGAACCTTTCTCAAAACAAATTAGAAGGTCCTTTACCACTTGAGCTGTCAAACTGTAAGAAAATGCAGTACTTTGATGCTGGATTCAATTCTCTAAATGGTTCATTCCCGTCTAGTTTGAGAACTTGGACAGGGTTGGCAACATTGAATTTAAGGGACAATCATTTCACTGGGGGTATCCCAACTTTCTTATCAGAATTTGAAGGCCTTTATGATCTACATCTTGGGGGAAATGTTTTTGGAGGCCAAATTCCTAGATCAATTGGTGGGTTGAAAAATCTTTTTTATGAGTTGAATCTAAGTGCTAATGGGCTGACTGGTGAAATTCCTCCTGAGATTGGAAAACTGACATTGCTGCAAAGCCTGGATATTTCTCTCAACAATCTGACTGGAAAAATTGAAGTTCTTGAAGATCTCACTTCATTGATTGAACTCAATATTTCATACAATTCTTTTTCTGGTCCTCTTCCAGAAACACTGGTGAACTTGCTCCATTCTTCTTCCTCATCATTCTTGGGAGTTCCTGGCTTATGTGTTAGATGTTTTCCATCAAATTGTTCCAAAAGTAGCAGCTTGAAGCCATGTGATGAGAACAACACTACACATCGAAAAGGGCTGAGTAAAATTAAAGTTATGTTGATAGCAGTTGGATCTGCACTACTGATATCAATTCTGTTACTTGGTCTTGTTTACCTGATATACTACAAGCAAGATGTGAAGATTTTTCCCGAACAGCGATCATCAACATTGCTCAAGAAGGTGATGAAGGTCACAGAGAACCTAAATGATAGGCATATTATTGGGAGAGGAGCTCATGGAGTTATTTACAAAGTTGAATTCAGTCTGGACAAGGTTTTTGTCATAAAGAAATTTCCCTTTAAAGATAACAAAAAACTGATTACTAGCATGAACGCAGAGATTGAAACCACTGGGAAGATAAGGCATAGAAATCTAGTGAGAATAAAAAACTTCTGGTTAAGAAAGGACTTTGATCATTCCTCTTATTCATTGCAATCTTTATCTGTTCCTGGTACAGTAGGGTACATTGCACCAGAGAATGCTTATTCAACAGTGATGAGTAGGAAGAGTGATGTGTATAGTTATGGAGTGCTTTTGCTAGAGCTGATATGCAGAAAGAAGGTGCTAGATGATCCTTCATTTGTAGAAGGAAAAGATCTTGTGGGGTGGGTTAGATGTATATGGGAAAAAACAAAAGGCATTGATGGAATTGTTGACTCAGGGCTTGAAGAGGAACTTTTGGATTCAAATTTGAGGGAACAAGTTGAACAAGTGCTCTTGATGGCATTGAGATGTACTGATAAGAATCCAGGTGAGAGACCAACAATGAGAGAAGTGGTCAAGGAGCTGATAGTTAGATGCAAAGATATTGACATGAAGAGTAAATGTTGA 3060 0.3859 MMVRFNLVMICFSAMLYAVTALNTDGVTLLSLQKHWTFVPPSINLSWNASDSTPCSWLGVQCDNNHSTIYLNLSGNSISGLLGPEIGHLSHLQTLDLSSNNFSGNIPPELGNCSLLQNLDLSYNSITGNIPDSLRNLQNLVSFSSMYNGITGQIPEFLFQLEHLEDLLLNQNSLSGSIPMNVGNGTEIVTLYLDRNQLSGMIPPSIGNCSKLVELYLDYNQLHGVLPDSINNLQSVVKLSFSNNRLEGTIPLLGSSTCKTLQYLDLSVNKFSGGIPSTLGNCSGLTEIYALNTSLGGSIPSSLGQLTQLSVLRLETNHLSGQIPSEIGNCRSLKYLMLNNNELEGEIPSELGKLSQLQDLRLHFNNLTGGIPVSIWKISSLQQLHVYFNNLSGEVPLELAELKQLRKLCLYHNQFSGVIPQNLGINSSLVEMDLSYNLFTGNIPANLCFGQQLLRLVLASNQLQGGIPPDMGRCTTLTRLRLDGNNLSGPLPDFASNCSLTYMDFSGNNINGTIPSSLGNCKNLTTVILSHNNLSGIIPFGLGNLVNLQRLNLSQNKLEGPLPLELSNCKKMQYFDAGFNSLNGSFPSSLRTWTGLATLNLRDNHFTGGIPTFLSEFEGLYDLHLGGNVFGGQIPRSIGGLKNLFYELNLSANGLTGEIPPEIGKLTLLQSLDISLNNLTGKIEVLEDLTSLIELNISYNSFSGPLPETLVNLLHSSSSSFLGVPGLCVRCFPSNCSKSSSLKPCDENNTTHRKGLSKIKVMLIAVGSALLISILLLGLVYLIYYKQDVKIFPEQRSSTLLKKVMKVTENLNDRHIIGRGAHGVIYKVEFSLDKVFVIKKFPFKDNKKLITSMNAEIETTGKIRHRNLVRIKNFWLRKDFDHSSYSLQSLSVPGTVGYIAPENAYSTVMSRKSDVYSYGVLLLELICRKKVLDDPSFVEGKDLVGWVRCIWEKTKGIDGIVDSGLEEELLDSNLREQVEQVLLMALRCTDKNPGERPTMREVVKELIVRCKDIDMKSKC 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00265 1019 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 58 254 - -
Vian5g00265 1019 SUPERFAMILY Protein kinase-like (PK-like) 797 1010 IPR011009 -
Vian5g00265 1019 Gene3D Transferase(Phosphotransferase) domain 1 879 1018 - -
Vian5g00265 1019 SMART serkin_6 811 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00265 1019 Gene3D Ribonuclease Inhibitor 452 745 IPR032675 -
Vian5g00265 1019 Pfam Protein tyrosine and serine/threonine kinase 864 1006 IPR001245 GO:0004672|GO:0006468
Vian5g00265 1019 Gene3D Phosphorylase Kinase; domain 1 783 878 - -
Vian5g00265 1019 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 347 - -
Vian5g00265 1019 SUPERFAMILY RNI-like 147 464 - -
Vian5g00265 1019 ProSitePatterns Protein kinases ATP-binding region signature. 817 844 IPR017441 GO:0005524
Vian5g00265 1019 Gene3D Ribonuclease Inhibitor 183 255 IPR032675 -
Vian5g00265 1019 SMART LRR_typ_2 209 232 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 306 330 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 641 666 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 89 113 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 402 426 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 354 378 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 689 712 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 545 569 IPR003591 -
Vian5g00265 1019 SMART LRR_typ_2 161 185 IPR003591 -
Vian5g00265 1019 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 349 447 - -
Vian5g00265 1019 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 889 1006 - -
Vian5g00265 1019 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
Vian5g00265 1019 Pfam Leucine rich repeat 189 246 IPR001611 GO:0005515
Vian5g00265 1019 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515
Vian5g00265 1019 SUPERFAMILY L domain-like 37 180 - -
Vian5g00265 1019 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Vian5g00265 1019 Coils Coil 669 689 - -
Vian5g00265 1019 Gene3D Ribonuclease Inhibitor 22 182 IPR032675 -
Vian5g00265 1019 Gene3D Ribonuclease Inhibitor 347 451 IPR032675 -
Vian5g00265 1019 Gene3D Ribonuclease Inhibitor 256 346 IPR032675 -
Vian5g00265 1019 Pfam Leucine Rich repeat 88 104 IPR001611 GO:0005515
Vian5g00265 1019 ProSiteProfiles Protein kinase domain profile. 645 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00265 1019 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515
Vian5g00265 1019 SUPERFAMILY RNI-like 419 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00265 Vian-Chr5 5675923 5679682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00265 13 879 Receptor kinase-like Gene Family AT1G73080 48.689 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian5g00265 PK_Tyr_Ser-Thr 5.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00265 - - qsu:112010432 1008.82