Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00253 ATGTCCACTTTCAGAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAGCTGTCAGCTCTCGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCGGTGACTACAGCTTCAACTTTTTGTTTGAAGAGGAATCTTCCTTGTGCAGGAGAACCCCACTATAATTCATTGTTCATAAACTGTGGAGGAGCTGAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTCAGCCGAAATGGCATTTCAAACTTTGATCTTAGAAATGATGAACAATGGGCCTATAGCAGCACAGGAGTATTTATGGGAAACAATGATGCAGATTTTGTAGCAGAAAATACATTTTCTTTGAATATTAGTGGCCCAGAATATTACCAAAACGCTCGCCTTTCTCCTATGTCGCTTAACTACTATGGCTTTTGTTTGCCAAACGGACAATATAAAGTGAAGCTCCATTTTGCTGAGATAATGTATACTGATGATCAAACTTTTAGAAGTTTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTGTTAGATATTTGAAAGACTTTAACATTGCGGAAGAGGCTGGTGGAGTTGGAAAGGGCATCACTAGGGAATATGATGTTGATGTTGATGATGGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTTCCATTCCTGATAGAGGTGTATATGGACCTCTGATATCTGCTATTGAGATGATACCGAACTTTGAGAATCCTTCAAAAGGGCTGTCTGCTGGAGTCATTGTTGGAATTGTTGCTGCATCATGTGGGCTTGTCATATTGATACTGGTTGTCCTTTGGAAGATGGGTCTTCTTTGTAGGAAAGATACAACGGATAAAGAACTTCTAGATATGAAAACGGGCTACTACAGCTTAAGACAAATTAAAGCAGCTACTAATAATTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGCTGCCAGACGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAGGGGAACCGAGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAACATCCTAATCTGGTGAAGCTATATGGCTGTTGCATTGAAGGCAACCAGTTGCTACTGATATACGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTTGGTGGAGAAGAAGTGAAGCGACACTTAGACTGGCCTACAAGAATGAAGATCTGTGTGGGAATAGCAAGGGGATTGGCTTATCTTCACGAAGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAGGGAACTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAAAATACTCATATCAGTACACGCATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGAGGGGCTATTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACGAAATACAGACCAAAGGAAGAGTTTGTATACCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAGGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAATTACTCTCAAGAGGAAGCCATGAGAATGCTGAGCTTGGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCAACCATGTCTTCTGTTGTGAGAATGCTTGAAGGAAAAATTCCAATCCAAGCACCTATAATCAAGCGCAGTGAGAACAACCAAGATTTAAGATTTAAAGCTTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTTTCATCTGCGTACTCTCAAGAAAGTATGAAGCAAGAAAACAAATCCGAAGATGGACCATGGCTTGACTCCTCCCTATATCTTCAAACTGGAGATGGTCATTCTTCAAGCAGTAAACTAATCTAA 1980 0.4081 MSTFRDLSYNNFTKSSASSCQLSDVNLASSHSSSAVTTASTFCLKRNLPCAGEPHYNSLFINCGGAEGEFEGNNYVGDLSRNGISNFDLRNDEQWAYSSTGVFMGNNDADFVAENTFSLNISGPEYYQNARLSPMSLNYYGFCLPNGQYKVKLHFAEIMYTDDQTFRSLGRRIFDVSVQGVRYLKDFNIAEEAGGVGKGITREYDVDVDDGTLEIHLYWAGKGTTSIPDRGVYGPLISAIEMIPNFENPSKGLSAGVIVGIVAASCGLVILILVVLWKMGLLCRKDTTDKELLDMKTGYYSLRQIKAATNNFDPANKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGGEEVKRHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDRELNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSQEEAMRMLSLALLCTNPSPTLRPTMSSVVRMLEGKIPIQAPIIKRSENNQDLRFKAFELLSQDSQTHVSSAYSQESMKQENKSEDGPWLDSSLYLQTGDGHSSSSKLI 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00253 659 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 283 387 - -
Vian5g00253 659 Gene3D Transferase(Phosphotransferase) domain 1 388 606 - -
Vian5g00253 659 SMART serkin_6 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00253 659 MobiDBLite consensus disorder prediction 619 659 - -
Vian5g00253 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vian5g00253 659 Gene3D Phosphorylase Kinase; domain 1 279 387 - -
Vian5g00253 659 ProSiteProfiles Protein kinase domain profile. 312 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00253 659 Pfam Protein tyrosine and serine/threonine kinase 316 582 IPR001245 GO:0004672|GO:0006468
Vian5g00253 659 Gene3D - 57 245 - -
Vian5g00253 659 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Vian5g00253 659 FunFam Putative LRR receptor-like serine/threonine-protein kinase 388 595 - -
Vian5g00253 659 CDD STKc_IRAK 318 585 - -
Vian5g00253 659 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 620 - -
Vian5g00253 659 SUPERFAMILY Galactose-binding domain-like 135 223 IPR008979 -
Vian5g00253 659 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 56 245 - -
Vian5g00253 659 Pfam Malectin domain 58 240 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00253 Vian-Chr5 5236925 5240531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00253 6 644 Receptor kinase-like Gene Family AT1G53440 65.639 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00253 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00253 - - gmx:100817368 1157.13