Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00252 ATGTCTTCTTCCTCCAATGAACTCATCCTCACTAGCTCCCCTGACGGGCCAATCATGGTCTACGAGACTGTTAGCCGCACCGCCGTGACACGGTTCTCCAGCAGCCGATCTCCGTGTCGCGGCCTGACCATGGTGGGCCGGAGATTGTTAGCAGCCTCACACGTATCATCAGACACGGGTGCAGGCTCCATGAACATCTACAATTGGCACGGTTCTTCTGTGTTTCGTAACTTCCCCGTGCCAGAACCCATTGCCCCTCTCATTGCAACACCCGATGGAGCATTTCTCTTCGGTGGTGGCATCTCAGGGAGTGTTATATCTCTTTCAGGTTCTTCTGGGGATGTCATCAGATCAACTGTTGTTCACTCAAGTCCAGTTTCCAGTCTTCATCTGAGCGACGATGGGTCACTTGTTATCTCAGGCAGTGAAGATGGAACAGTTGTTGTTGTCCCTAGCTTCAAGATCGTTGCCGAGGGTTCCTTGGAGGAGAATGTGGAAGACTTGATCTTGCACAAATGGAAGGCGCATTCTGATTCCGTGACTGCTTTCAAGTCTGTGATGGGTACTTTGGTTTCTTGCTCATTAGACCGAACATGCAAGTTTTGGAATCTGGAAAACTGTGGGGTCCTTATGCAGACTGTGACATTACCTTGTTCCGTTTCTGGGGTTGCCGTAGATTCATCGGGGTCAACGTTTTACGCTGGTGGTGCAGATGGGTTTGTTTATAAGGTTGAAAATAGAAAAGTAGTGGGTGATAAGGGTTGTAAGGTGAGAAAATGGGGTCAAAAGCATAGTGGGGGGATTGTGTCATTGGCTTTGGTGAAGGAAGAGAGGAATGTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTTGTGATGGTTTTTGGGGATGAATTGATAACTATCAGTGACATGATTGTGATAAAGGGAAATGGTGGTGGGTTTGGAGTTGGAAAGGGAAATGATGTTGCAGTTGGTGAAGAGAATGGGTCCTTCACTTCTTCTAGGTTATGTGATGAAGAGATTCTTAGGACAATGAATCAAATGAAAGCCCTTGAAGAGGTCAAGGATGTTGTATTACAAGACAGGAAAAAGGCCATTGAAATGTTGGAATCTGTGATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACAAAAGCCATTGAAGAAGAAAAAGAAGAAATGGATGAAGAAGACAAAGATGATAAACATGAAGAAGAACACGAGAAAGATGATAAACATGAAGAAGAACATGAGAAAGATGATAAGAAGGAAGGGAACTAG 1320 0.4538 MSSSSNELILTSSPDGPIMVYETVSRTAVTRFSSSRSPCRGLTMVGRRLLAASHVSSDTGAGSMNIYNWHGSSVFRNFPVPEPIAPLIATPDGAFLFGGGISGSVISLSGSSGDVIRSTVVHSSPVSSLHLSDDGSLVISGSEDGTVVVVPSFKIVAEGSLEENVEDLILHKWKAHSDSVTAFKSVMGTLVSCSLDRTCKFWNLENCGVLMQTVTLPCSVSGVAVDSSGSTFYAGGADGFVYKVENRKVVGDKGCKVRKWGQKHSGGIVSLALVKEERNVVSAAEDGSVWMWDVEKGEVVMVFGDELITISDMIVIKGNGGGFGVGKGNDVAVGEENGSFTSSRLCDEEILRTMNQMKALEEVKDVVLQDRKKAIEMLESVIEMYERLLKLILKEATKAIEEEKEEMDEEDKDDKHEEEHEKDDKHEEEHEKDDKKEGN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00252 439 SUPERFAMILY WD40 repeat-like 3 314 IPR036322 GO:0005515
Vian5g00252 439 Gene3D - 165 316 IPR015943 GO:0005515
Vian5g00252 439 PANTHER WD-REPEAT PROTEIN 18 6 397 IPR045227 -
Vian5g00252 439 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Vian5g00252 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Vian5g00252 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 302 IPR001680 GO:0005515
Vian5g00252 439 MobiDBLite consensus disorder prediction 402 439 - -
Vian5g00252 439 Coils Coil 375 413 - -
Vian5g00252 439 Gene3D - 1 164 IPR015943 GO:0005515
Vian5g00252 439 Pfam WD domain, G-beta repeat 116 149 IPR001680 GO:0005515
Vian5g00252 439 Pfam WD domain, G-beta repeat 170 203 IPR001680 GO:0005515
Vian5g00252 439 SMART WD40_4 112 151 IPR001680 GO:0005515
Vian5g00252 439 SMART WD40_4 207 245 IPR001680 GO:0005515
Vian5g00252 439 SMART WD40_4 253 293 IPR001680 GO:0005515
Vian5g00252 439 SMART WD40_4 166 203 IPR001680 GO:0005515
Vian5g00252 439 MobiDBLite consensus disorder prediction 415 439 - -
Vian5g00252 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 298 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00252 99 303 U-box Gene Family AT1G04510 27.488 5.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00252 K14829 - gmx:100785191 503.442