LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00238	ATGACTTGCTTCCCATTCTCATTTGGTAGGAAAGTGCCCCCTGTGGCAAGACACAATCCAGATATTGATGAAGAACTCTCTGGCATTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAGAGTTGCATCTGACAATTTCAGTCAGGCCAATAAAATTGGGCAGGGTGGCTTTGGTTTTGTTTATAAGGGATTACTAAAAGATGGGAATCTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGATGTTGTGTGGAAGGGAACAATCGAATACTAGTCTACAATTATCTTGAGAACAATAGCCTTGCACAAACCCTTTTAGGTTCAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTCACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGGTTACCGATAGGAGAGCAGTTTGTTTTAGAAACGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGACGGGCATTTTGATGCCGAGGAGGCCTGTAAATTTCTGAAAGTTGGACTTCTTTGCACTCAGGACACATCGAAACTCCGGCCACCAATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAATGGACATAGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGATCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGGCATTTACTGCAATTCCTATGGCTCTCTCTATCAGACCCTCTGTGAGAGTGCAGCCTGAACGAAGAGATTGGATCAGCTACTTCGATTCTCTGTTGGCGAGGTTGGCGTTGTGCAGCATCTGCTCAAGTGACAAACGCGACTCCAGTGACGAGGAGATAGCGGACTTGGAGGTAATCGAGGTGGTGGCGGACGGTGGCTACGGGCGAGTCTACCGGTGCCTCGATCCTGCCTCCAGCAACGTCTTCGCCGTGAAACAGATCGCAATAATCGGCTCGTTCCAGGGTGTACCGTCTTCGATCATCCGCGAAGTGTCGCTCCTCAAAGAACTCCACCATGAGAACATTGTGAGGTTGCTTAAAGTCTATGTGAAGGGAGAAAGACATGTCAATCTTGTCTTCGAGCATTTCCAGGGCGACCTTCATGACTATATTAGGTACAAGCGTTATCGCAATTACGCGATTATAAAGAGTTTCATGCAGCAGATACTCGCTGCTCTGGAATTCTGCCATTCGCGGAAGATTTTGCATAGAGATTTGAAACCCGGCAATGTGCTGGTTGATGAACCCAATTTGCAGATCAAACTTGCCGATTTTGGTTTGGCTAGAGAGTTTAGAGATGACATATCATATACTGACCAGAGTATTCAGTTAGGAACTGCCTGGTACAGGGCACCTGAAATGTTGTTCGACAACTGTCAATATTCATCTCCAATTGATTTGTGGGCTGCTGGCTGTGTATTTGCTGAGATGCTAATTGGAGGACCTCTATTCATAACTAATAAGAACCGGGATGAGTTGGAGGCAATTTTCAGACTGTTAGGTACTCCTACAGAGGATACATGGCCAGGAATCACTCAATTAATGCCTAGCCTTCATAATAAGTACCCGAAATATAATCCAGTGGGCATGGACAAACTCTTTCCTCAACTGGAAGAAAGTGGCCAGAATCTTCTTGCAAGATTGCTTTGCTTGAACCCAATTGAAAGGATTTCTGCATCAGCCGCTCTAAACCATGATTACTTCAAGGATGTTGATTTGATTTGGGAAGGAAAGCCAAGGGAGCAGTCGTCGAGTTGCATTCCTTTTCGATGA	1944	0.4403	MTCFPFSFGRKVPPVARHNPDIDEELSGIQNVRIFTYKELRVASDNFSQANKIGQGGFGFVYKGLLKDGNLAAIKVLSAESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLAQTLLGSGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFVLETRRELVALVDASLDGHFDAEEACKFLKVGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSASDSQGNTMAFTAIPMALSIRPSVRVQPERRDWISYFDSLLARLALCSICSSDKRDSSDEEIADLEVIEVVADGGYGRVYRCLDPASSNVFAVKQIAIIGSFQGVPSSIIREVSLLKELHHENIVRLLKVYVKGERHVNLVFEHFQGDLHDYIRYKRYRNYAIIKSFMQQILAALEFCHSRKILHRDLKPGNVLVDEPNLQIKLADFGLAREFRDDISYTDQSIQLGTAWYRAPEMLFDNCQYSSPIDLWAAGCVFAEMLIGGPLFITNKNRDELEAIFRLLGTPTEDTWPGITQLMPSLHNKYPKYNPVGMDKLFPQLEESGQNLLARLLCLNPIERISASAALNHDYFKDVDLIWEGKPREQSSSCIPFR	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00238	647	Pfam	Protein kinase domain	342	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00238	647	ProSiteProfiles	Protein kinase domain profile.	47	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00238	647	Pfam	Protein tyrosine and serine/threonine kinase	50	132	IPR001245	GO:0004672\|GO:0006468
	Vian5g00238	647	Gene3D	Phosphorylase Kinase; domain 1	325	421	-	-
	Vian5g00238	647	SUPERFAMILY	Protein kinase-like (PK-like)	22	239	IPR011009	-
	Vian5g00238	647	FunFam	cold-responsive protein kinase 1	18	122	-	-
	Vian5g00238	647	SMART	serkin_6	340	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00238	647	Gene3D	Transferase(Phosphotransferase) domain 1	429	641	-	-
	Vian5g00238	647	Gene3D	Transferase(Phosphotransferase) domain 1	118	248	-	-
	Vian5g00238	647	Gene3D	Phosphorylase Kinase; domain 1	18	117	-	-
	Vian5g00238	647	FunFam	CMGC family protein kinase	422	630	-	-
	Vian5g00238	647	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	347	537	-	-
	Vian5g00238	647	SUPERFAMILY	Protein kinase-like (PK-like)	339	629	IPR011009	-
	Vian5g00238	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Vian5g00238	647	ProSiteProfiles	Protein kinase domain profile.	340	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00238	647	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00238	Vian-Chr5	4873208	4881792	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00238	341	628	Core Cell Cycle Gene Families	AT3G48750	42.955	1.54e-80	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Vian5g00238		Pkinase	5.2e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00238	K02206		-	gmx:100810997	372.859