Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00237 ATGACAGAGGTAGTTCCTGGAACTGAAGAGGCTGCTGAACCTCCAGCATCACCTCAACCATCTCCTGATGTGCCACATAATATGGAAACTGAACAATTAACTCCTACAAAGTATTCTATTATGAGTAGGAATGGGTTTGGGACCGCAGGAAAACATATATCTTTACTTGTGAATCTCTTTGAAGTTTCTGTTAATGCTCCGGACACACTCCGTAGTGCTGGTGCTGATGGAAGCCTTTGTGAGGAAAGTAAAAGGTCAAAACATTCTTTTCAGCTAAAGACATTCATGGTGGAGATAAGTTTTGCAGCCAAAATACCCATGCAGTCCATTGCCTTTGCTCCCAAATGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGATTGTGGGTGTCTTTTGGTAAGGCAATCCTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCAGACGTGTCAACAACTGTGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAGGTTCTTAAAAATTTAAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAGCAACTTTTTAGTATGAAGGTTAAAAATGACAACGGCAGTAATGAAGGACAGACGGTGGAGATTACTGTATATGAATATTTTGTAAAACATTGTGGCATTGATCTGCCCTCATCTTATTATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGGCTGTAGGAAACTATTGCTGTGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCACAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACTTATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCACATTCTTTGGTAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGTTGGATCTCGATGTTGGCCATTGATTTCAAGGTATAGAGCGTCTGTGAGATTGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCATTAGAAAATGGGGGTGACGATGGTATTATCAGGGATGGAGTAAGTGAATCACAATTTCAACAAGTTTTGACTTTCGAGCTTGACCAGATAATAAAGGCCTATCAACGTCTCGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAAGCTGTTTCAGGCTAATAGTCCGGAAAATGTTCCTCCAGGGACTGTTGTGGACACAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCAGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCGGCAGCTCAGATTGGACGATTTTTGGATGTTAATGATTTATCAGAAACGGGCTTAAGTTCTACTGCAGAGCTTCCAAGATTGCATAAAAATATCAGGAGTTCCATGTTCTTCTGTTGA 1818 0.4202 MTEVVPGTEEAAEPPASPQPSPDVPHNMETEQLTPTKYSIMSRNGFGTAGKHISLLVNLFEVSVNAPDTLRSAGADGSLCEESKRSKHSFQLKTFMVEISFAAKIPMQSIAFAPKWVDSDANSEDALRVLDTVLRQRAADCGCLLVRQSFFHDDPRNFTDVGAGVTAVSDVSTTVIIKPGPVIDFLLSNQQVKEPRYIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDNGSNEGQTVEITVYEYFVKHCGIDLPSSYYFPCLDVGKPNRPNYLPLEAVGNYCCDDDPVLAACGISVDKQLALVEGRVLEAPQTLLQPSHIDYWAVVNFSARCDTSYLSRELIRCGMSKGINIERPHSLVEEEPQLRRSNPVARVVGSRCWPLISRYRASVRLQASKVEMIDALYKPLENGGDDGIIRDGVSESQFQQVLTFELDQIIKAYQRLGEDDVPKFTVIVAQKNHHTKLFQANSPENVPPGTVVDTAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQIGRFLDVNDLSETGLSSTAELPRLHKNIRSSMFFC 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00237 605 SUPERFAMILY PAZ domain 170 293 IPR036085 GO:0005515
Vian5g00237 605 MobiDBLite consensus disorder prediction 1 29 - -
Vian5g00237 605 ProSiteProfiles Piwi domain profile. 430 576 IPR003165 GO:0003676
Vian5g00237 605 SMART Piwi_a_2 304 576 IPR003165 GO:0003676
Vian5g00237 605 Pfam Piwi domain 386 574 IPR003165 GO:0003676
Vian5g00237 605 Gene3D paz domain 173 294 - -
Vian5g00237 605 Pfam Argonaute linker 2 domain 295 327 IPR032472 -
Vian5g00237 605 SUPERFAMILY Ribonuclease H-like 430 574 IPR012337 -
Vian5g00237 605 CDD PAZ_argonaute_like 179 291 - -
Vian5g00237 605 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 295 374 - -
Vian5g00237 605 Pfam PAZ domain 183 292 IPR003100 GO:0005515
Vian5g00237 605 ProSiteProfiles PAZ domain profile. 204 268 IPR003100 GO:0005515
Vian5g00237 605 Gene3D - 361 605 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00237 Vian-Chr5 4861689 4872594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00237 364 605 Eukaryotic Initiation Factors Gene Family AT5G43810 38.542 2.01e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00237 K11593 - twl:120000282 397.127