Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00234 ATGGACAGCACCGAAGACTCATCAACGAGTTCACAACAACAACCAAACCTCCCACCCGGGTTTCGGTTCCACCCCACAGACGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAAGTTGATTCTGTTCCTCTCCCTGTTTCCATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGTCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGTCCAAGAGATAGGAAGTACCCAAATGGCGCGAGGCCAAACAGAGCTGCAACTTCAGGGTACTGGAAGGCGACGGGGACAGATAAACCCATATGCAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTACGGAGGAAAGCCACCAAAAGGGGTGAAAACCGATTGGATCATGCATGAGTATCGTCTCGCTGAAACCAAGCCTAACAACAGACCACCTGGCTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAACACACAAAGGTCAGCTATGGAGCAGGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTACCTTCTTCCATGAACGTGGGCCACATGAATGCGAGATTTCACCTTTCAAAGATGTGTACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGCAATGGTGTGAATGGGATGAGCACTACTACTACAAGTGCCATGCCATCTCAGTTTGGCACTTCAGCCTCCAAAAGAACACTCTCAACACTCTATAACTGGAACGATGACAGTGATGAAAAACACTTCAATTTGGACACTAATGGTAATGTCAGTGTTGTGAGGACTGAAGAGAACAATGCTTCTCCTGGCTCCTTTGCTACTCTGCTTAACCAGCTCCCACAATACCAAATACAAGGGACCAATTGGTACGGCTAA 972 0.4712 MDSTEDSSTSSQQQPNLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAKSSFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSAMEQERDDSMDDMIGEVPSSMNVGHMNARFHLSKMCTSYSGALLENDRNTLEGVVIGNGVNGMSTTTTSAMPSQFGTSASKRTLSTLYNWNDDSDEKHFNLDTNGNVSVVRTEENNASPGSFATLLNQLPQYQIQGTNWYG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00234 323 FunFam NAC transcription factor 56 26 181 - -
Vian5g00234 323 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Vian5g00234 323 PANTHER NAC TRANSCRIPTION FACTOR 56 17 219 - -
Vian5g00234 323 MobiDBLite consensus disorder prediction 1 22 - -
Vian5g00234 323 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Vian5g00234 323 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
Vian5g00234 323 MobiDBLite consensus disorder prediction 1 19 - -
Vian5g00234 323 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00234 Vian-Chr5 4775185 4776840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00234 1 322 NAC Transcription Factor Family AT3G15510 51.240 9.18e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g00234 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00234 - - gmx:100812933 551.977