Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00230 ATGGTGAAGATGGAACTCATGAGATGGGTTCCCTTGGTGTTGGTTGTTGTTTTTCTAGTTTTGGTTAATGGGTCGTTTTCCTTATACACTCCTCCTGATAGCTATCTAATTGCATGTGGTTCTTCTCAAAACATCACCTTTCAAGGACGCACTTTTGTTCCTGACTCACAGCATTCTTCACTTGTAATGAAAACTGGGAATTCTTTTGTTGCTAGCACCAATTCTAGTGCCCCTTTTCCCATTTACCAATCGGCTCGGGTTTTCACCGAGAAAGCTTCTTATAGGTTTGAGATTCAGCAAGAAGGTAGGCACTGGGTTAGGCTATACTTTTCCCCTCTTCCAAACTCCAGCCACAACTTGACTTCAGCTTCTTTGACAGTGGTTACTGATGATTTTGTACTCTTGAGCAACTTCACCTTTAGGAAATACAATGGTTCTTATATGTTCAAGGAGTATGTTGTGAATGTAACCTCTGATGCATTGGTTGTGACCTTCATTCCTTCCAATGGTTCGGTGGCCTTTGTGAATGGAATTGAAGTTGTGTCAATGCCAAATGAGCTGTTTGTTGATCAGGCACTCTCTGTTAACCCGCCAGCACCATTCAATGGACTTTCTGACCTTGCCTTTGAAACTGTTTATCGGTTGAATATGGGGGGTCCTTTGATTACTTCTGAAAATGACACCCTGGGTAGGACTTGGCTGAATGATAGAAAATACCTTCATGTGAACAGCTCAGTCCTTAATGTATCGGTGAATCCTTCAAGCATTAAGTATCCCGTGGCTGTTACACCTGAGACTGCCCCAAATTGGGTCTATGCCACTGCTGAAGCAATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATCACTTGGGTCTTCAATGTGGATCCAAATTTTTCCTATTTCATTCGGGCGCACTTCTGTGATATTATGAGCAAGTCACTCAACAATTTAGTCTTCAACATGTTCATAAATTCTGACATAGCTCTTCAAAGCCTTGATCTCTCAACCATGACTAATGACTTGGCTGTGCCTTACTTCAAGGACTTTGTTGCCAATGCCTCTGCAGACTCAAACACTTTGACTGTGAGTGTTGGTCCAGATCCTGTGGCTGACTTTCCAAATGCCACTATGAATGGGTTGGAGATAATGAAGATCAGCAACTCGTTAAAGAGCTTGGATGGGCTTTATTCAGTTCACAGTCTTCTTCCAGGTTCACATTCAAAGAAAAGCATGGTAGGAGTAATTGTTGGTTCTGCTGTTGGTGCTGTAGCAGCTTTAGCAATAGCTGGTTTGTGTTATTGCTGCTTGGTGGGACGCAAATCAAAGTCATCCACTCAACAGGGCCATTCATGGCTGCCTCTGCCCCTTTATGGAAACTCTCTCACCATGACAAAAAATTCAACACTTTCACAGAAGAGTGGAACCGCAAGCTGCATTTCTTTAGCTTCATCAAATCTCGGACGGTTCTTCAACTTCCAGGAAATCCTAGATGCTACCAACAAATTTGATGAGAAGCTACTTCTGGGTGTTGGTGGTTTTGGAAGGGTTTACAAAGGAACGCTTGAAGATGGGACCAATGTAGCTGTGAAAAGGGGTAACCCAAGATCCGAGCAAGGGCTTGCAGAATTCCGGACAGAAATTGAAATGTTATCCAAGCTTCGCCATCGCCATCTTGTGTCCCTCATTGGTTATTGTGATGAGAGGTCAGAAATGATTCTTGTGTATGAATACATGGCTAACGGACCCCTCAGGAGTCATCTGTATGGAACAGAGCTGCCACCTCTCTCATGGAAGCAGCGGCTGGAGATTTGCATTGGAGCAGCAAGAGGCCTTCATTATCTCCACACCGGAGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAATATCCTCTTAGATGAGAACTTTGTTGCAAAAGTTGCCGATTTTGGCCTCTCCAAGACTGGTCCTTCTCTTGATCAGACCCATGTGAGCACTGCTGTGAAGGGTAGTTTTGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACTGAAAAATCAGATGTGTATTCATTTGGGGTAGTGTTGATGGAAGTGTTATGCACAAGGCCAGCCTTGAACCCTGTACTTCCAAGGGAGCAGGTAAACATAGCTGAATGGGCAATGACCTGGCAGAAAAAGGGTATGCTTGATCAAATCATGGATCAGAATCTTGTTGGCAAGGTGAATCCTGCATCCCTGAAGAAGTTCGGGGAGACAGCAGAGAAGTGCTTGGCCGAGCACGGCGTGGACCGGCCGTCCATGGGAGATGTTTTGTGGAATCTTGAGTATGCATTGCAGCTTCAAGAGACATCATCAGCACTCATGGAGCCAGAAGACAACAGCACAAACCACATCACTGGAATTCAGTTGACACCCCCAGACCATTTTGATAACAGTGTGAGTATGATTGATGGGGGAAACTCTTGCACTGATGATGATGCAGAAGATGCTGCTACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATGA 2538 0.4425 MVKMELMRWVPLVLVVVFLVLVNGSFSLYTPPDSYLIACGSSQNITFQGRTFVPDSQHSSLVMKTGNSFVASTNSSAPFPIYQSARVFTEKASYRFEIQQEGRHWVRLYFSPLPNSSHNLTSASLTVVTDDFVLLSNFTFRKYNGSYMFKEYVVNVTSDALVVTFIPSNGSVAFVNGIEVVSMPNELFVDQALSVNPPAPFNGLSDLAFETVYRLNMGGPLITSENDTLGRTWLNDRKYLHVNSSVLNVSVNPSSIKYPVAVTPETAPNWVYATAEAMGDANVNDPNFNITWVFNVDPNFSYFIRAHFCDIMSKSLNNLVFNMFINSDIALQSLDLSTMTNDLAVPYFKDFVANASADSNTLTVSVGPDPVADFPNATMNGLEIMKISNSLKSLDGLYSVHSLLPGSHSKKSMVGVIVGSAVGAVAALAIAGLCYCCLVGRKSKSSTQQGHSWLPLPLYGNSLTMTKNSTLSQKSGTASCISLASSNLGRFFNFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTELPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPPDHFDNSVSMIDGGNSCTDDDAEDAATSAVFSQLVNPRGR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00230 845 FunFam Receptor-like protein kinase FERONIA 208 389 - -
Vian5g00230 845 SMART serkin_6 504 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00230 845 Pfam Malectin-like domain 37 387 IPR024788 -
Vian5g00230 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vian5g00230 845 ProSiteProfiles Protein kinase domain profile. 504 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00230 845 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Vian5g00230 845 FunFam Putative receptor-like protein kinase 34 184 - -
Vian5g00230 845 Pfam Protein tyrosine and serine/threonine kinase 509 771 IPR001245 GO:0004672|GO:0006468
Vian5g00230 845 FunFam receptor-like protein kinase FERONIA 466 579 - -
Vian5g00230 845 Gene3D - 34 184 - -
Vian5g00230 845 Gene3D - 207 389 - -
Vian5g00230 845 Gene3D Transferase(Phosphotransferase) domain 1 580 801 - -
Vian5g00230 845 SUPERFAMILY Protein kinase-like (PK-like) 483 775 IPR011009 -
Vian5g00230 845 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Vian5g00230 845 CDD STKc_IRAK 510 775 - -
Vian5g00230 845 PANTHER OS07G0166700 PROTEIN 490 781 IPR045272 GO:0004714|GO:0006468
Vian5g00230 845 FunFam Receptor-like protein kinase FERONIA 580 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00230 Vian-Chr5 4661694 4664231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00230 9 845 Receptor kinase-like Gene Family AT3G46290 52.650 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vian5g00230 Malectin_like 7.3e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00230 - - gmx:100809700 1542.32