Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00224 ATGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTCCCAGATGGACAAGAGATCGCTGCCAAGAGGCTTTGTAGTAATACTGGCCAAGGAATTCAAGAATTCAAGAATGAAGTTATACTGTGTGCCAAACTACAGCACAGGAATCTTGTAAAGCTTCTCGGTTGTTCCATTCAAGGAGAGGAGAAAGTTTTGGTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTTCTATTTGATTCTTCCAAAAAAGGAATCCTAAACTGGTCAAAGCGGTTGAATATTATACATGGCATTGCTCGTGGGCTTCTATATCTTCACCAAGATTCTAGATTAAGAATCATTCATAGAGACATGAAAGCGAGTAATATCCTGTTAGACAATGAGCTGAATCCAAAAATTTCTGATTTTGGTATAGCACGAATGTTTAGAGGAAATCAAACAGAAGGAAATACAAAACAAGTTGTTGGAACATATGGGTACATGGCACCAGAATACACAATTAGTGGGCTGTTCTCTATCAAATCTGATGTGTACAGCTTTGGAGTACTGCTACTAGAGATAGTAAGTGGCAAGAAAAATGGAGGAATTTTCTTTCAGAATCACGGACTTAATCTATTAGAACATGCTTGGAGATTGTGGAAAGAGGACGCTCCTATGAAATTAGTAGATGCTTCTTTGGGTGACACCTTTAACATATCTGAAGCATTACGCTGCATTCATGTTGGTCTACTATGTGTGCAGCTACATCCAGATAACAGGCCAAATATGGCATCTGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCAAGAACCTAAGGAACCTGGTTTTCTTGTTGCAAGGATGAAAACTGCTGCCGAATGTTCAACTAGCAATGCAATTAGTACTTGCACTAATGAATTAACTATAACCCTGCCACAGGCTAGGTAG 942 0.3928 MLGQGGFGPVYRGTLPDGQEIAAKRLCSNTGQGIQEFKNEVILCAKLQHRNLVKLLGCSIQGEEKVLVYEYMPNKSLDSFLFDSSKKGILNWSKRLNIIHGIARGLLYLHQDSRLRIIHRDMKASNILLDNELNPKISDFGIARMFRGNQTEGNTKQVVGTYGYMAPEYTISGLFSIKSDVYSFGVLLLEIVSGKKNGGIFFQNHGLNLLEHAWRLWKEDAPMKLVDASLGDTFNISEALRCIHVGLLCVQLHPDNRPNMASVIFMLSGENILQEPKEPGFLVARMKTAAECSTSNAISTCTNELTITLPQAR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00224 313 Pfam Protein tyrosine and serine/threonine kinase 2 204 IPR001245 GO:0004672|GO:0006468
Vian5g00224 313 ProSiteProfiles Protein kinase domain profile. 1 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00224 313 SMART serkin_6 1 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00224 313 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Vian5g00224 313 FunFam Putative DUF26-domain receptor-like protein kinase family protein 8 71 - -
Vian5g00224 313 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 72 275 - -
Vian5g00224 313 Gene3D Transferase(Phosphotransferase) domain 1 73 279 - -
Vian5g00224 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vian5g00224 313 SUPERFAMILY Protein kinase-like (PK-like) 1 281 IPR011009 -
Vian5g00224 313 CDD STKc_IRAK 2 267 - -
Vian5g00224 313 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00224 Vian-Chr5 4479518 4480810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00224 1 308 Receptor kinase-like Gene Family AT4G11530 55.873 2.49e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00224 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00224 - - qsu:112024700 441.039