Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00222 ATGGTGTTGTCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTGGAGGAGATGCTGGATTCACTTCGGCGGAGGGACGAGGAGGAGGAGAAGAAGAAGGACGCGCCACCGGCGTTGCCTCCGAGGCCGACCTCGCGTGCAAGGCTTCCTCCAGCACGGCGGTCGCTGCCGAATGATTTTAAGGTCAGCGGCAGCGAGCGCCGTGTCGTGCTGGAGAACGGAGTTGCTACTAATGAGGAGAGTGAAGTAAAGGAGATGGATTTGGGGCAGAAGAGGAGAAAGTGTGGTTTTGGGAGCAAGAGGTTGAAGAAGGATGTGGAATCTCCTTATGTGGCAATTTCTTCCAGTGATTCATCTGGGAAGGTTTGGGAATTGGATGGTGATGATAGCATATCTTATTTCATCAGAAAGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAATGGTCCAGTCAACTTCAGGAGAGGAAGCATTCGTTTCACTCTCAAATGGAAATGTTATGAAAGTGAACAGGTCAGAGATTCTACCAGCAAATCCTGATGTTTTGGAGAATGTGGATGATCTAATTAAACTTTGCTATTTGAACGAACCGTCGGTTCTTCACAGTCTTAAATTAAGATATTCTCAGGGGATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATCTTCAGATGTATGGAAATAAATATGTCTCAGCCTGTAGCCAGAGAACTATGAATGGTCCTCATGTTTATGCTACGGTAGATGCAGCTTATAACAAGATGATGAGAGATGAAGTAAATCAGTCCATTATCATAAGTTGGTTTATTTTCATGGCTGTGTTTGTCATATCCAAAACCCATATGCTAACTGGAACAGTATTGTTGGAAAAGCAGTCCAGAGTTGTTCAACTGGCCCGTGACGAGAGATCGTATCACATATTTTATCAACTTTGTGCTGGATCTTCAGCTGATCTTAAAGAGAAACTGAATCTTAGAGCAGTAAGTGAATATAAGTATCTAGTTCAGAGTGACTGCATGTCAATTGATGGTGTTGATGATGCCAAAAACTTTGATCAGCTGATGGAAGCACTGGATGCAGTTCGAGTGTGTAAAGAGGATCAGGAGCTGATCTTTAAGATACTGGCTGCATTACTATGGTTGGGAAATATATCATTCCAAGTAGACAGAGAAAATCACATTGAGGTTGTTGAGGATGAAGCTGTAAACAGTGCTGCCCAGCTTATGGGTTGCAGTTCCCAGGATTTAATGACAGCATTATGTACCCATAAAATCCAAGCTGATGAAGATACTATTGCAAAAAATTTGACATTGAAGCAGGCAATTGAAAGAAGAGATGCAATTGTAAAATTTATCTATGCAAGCTTGTTTGACTGGCTCTTAGATCAAGTTAACAAGTCACTTGAAGTGGGTAAAAAATGTACATGGAAATCCATAAGTATCCTCGATCTTTATGGGTTTCAGACTTTCCAGAAAAATGGCTTTGAGCAGTTTTACATAAATTATGCAAATGAAAGGATTCAACAACACTATAATCGCCATCTGTTTAAACTAGAGCAGGAGGACTATGAATTGGATGGCATTGATTGGACTAAAGTAGATTTTGAGGACAATCAAGGGTGCTTGGATCTATTTGAGAAGAAACCTCAAGGTCTACTCTCTTTGTTGGATGAAGAGTCAAATTTACCAAACGCTTCTGATTTGACATTTGCCAACAAACTTAAGCATCACTTGCACCCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCCGCATTCGTCACTATGCAGGAGAGGTTCTGTATGATACAAATGACTTTTTAGAAAAGAACAGAGACACGATGTCTTCTGACTGCATTCAGTTCCTGTCATCATGTAATTCTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCCCAAAAGCAGAGTGTTGCAACCAAGTTCAAGGTTCAATTGTTCAAGTTGATTCATCAGTTGGAGAGCACCATGCCTCACTTTATTCGCTGCATAGCACCAAACACTAAACAGCTTCCTGACATTTATGATGAAGGAGTTGTCCTACGTCAGCTCAGGTGTTATGGAGTTCCAGAAATCCTTAGACTTTCAAGGGCTGGATATCCTACTCGAATGACCCATCAAGAGTTTTCCAGAAGGTATGTGTTTATGCTTTCTGAAGCCAACGTATCCCATGATCCATTGAGCATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATGCACTGGAGAATATGAGAAAGCAGATTTTACAGGGAATAATTGGGATTCAAAAATGTTTCCGTGGTCATCAAGCTCGTGGTTGTTTCTGTGAACTTAAGAATGGAGTGACAACACTACAATCATGTACTGCCATTATTCGTGGAGAAAATTCAAGAAGGAAATATGGTGCCATGTCGAAGTCTTCAATAACAATTTATTCTAGAAAACTGGAGGAGATCCATGCAATCATACGCTTACAATCTGTAATTCGTGGTTGGCGGGTTAGAAAGGATGCTAGTCATGTAAATAGGTTAAAGAAATATCCTGAAAATGCTAAACCTAGGCGGAAGTCCTTTATGAAGATAATACCAGAAGTACAGGAAGAGGCCACGCGTGCGAATGAAGCGCAGTGGTCGTCGAAGGAAGACGGTCTTGATTGCTATGGTTACCAGAGGAAAAGGGTGCTATGTGACAGTGAAAAGAGGCACACAATTGTCGCGACAGAAGATGGGGTGGGACGGGGGGAAGGCTGGGTGGTTAGGTGGCGAGAGGTGAGGGAGGAATGTCCATTTTGTAGATTGAAGGATCTGTCCAAAGAGCCAGTTCAGAATCTGCTTTCAGCTTTAGCAGAACTCCAAAGGCAGGTTGATAAGGCTGATGCAGTTGTAGAGCAAAAGGAAGAGGAATATATTGAGTTGAGGGAACAGCTAAAACAGTCTGAGAGAAAGAGGATTGAATATGAGACAAAAATGAAGTCAATGGAGGAGGCTTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCAAGAAAGAGCCTTGCTTCTGAGAATGCTACTGTTCAACCTGTAAGACATGATTTTGTGTTACCTCGTGGTTATGATTCTGAAGATACGTCCATGGGATCAAGAACTCCTGGTGGGAGCACACCAATGCTTTCTGGCAATCTGTCTATCACTGATGCAGGGAGACAGGTCAATGGCAATTTGACTACAATCAGCAATCTGATGAAAGAATTCGAGCAACGAACACAGGACTTTGATGGTGAAGTAAAAGCTATGCACGATGTCAAACCGGGGCAGTGTGCAAACACAAACTCGGTTGAAGAACTTAGGAAACTTAAACAGAGATTTGAAGGGTGGAAGAAACAATACAAGATCAGATTACGTGACACCAAGGCAAGGCTGTATAAATCAGAATCAGAGAAAAGTTGGCGAGCATGGTGGAAGTTAGGCTCCAGAGCATAA 3573 0.424 MVLSASPCSLARSSLEEMLDSLRRRDEEEEKKKDAPPALPPRPTSRARLPPARRSLPNDFKVSGSERRVVLENGVATNEESEVKEMDLGQKRRKCGFGSKRLKKDVESPYVAISSSDSSGKVWELDGDDSISYFIRKKLRVWCRQPRGQWELGMVQSTSGEEAFVSLSNGNVMKVNRSEILPANPDVLENVDDLIKLCYLNEPSVLHSLKLRYSQGMIYSKAGPILIALNPFKDLQMYGNKYVSACSQRTMNGPHVYATVDAAYNKMMRDEVNQSIIISWFIFMAVFVISKTHMLTGTVLLEKQSRVVQLARDERSYHIFYQLCAGSSADLKEKLNLRAVSEYKYLVQSDCMSIDGVDDAKNFDQLMEALDAVRVCKEDQELIFKILAALLWLGNISFQVDRENHIEVVEDEAVNSAAQLMGCSSQDLMTALCTHKIQADEDTIAKNLTLKQAIERRDAIVKFIYASLFDWLLDQVNKSLEVGKKCTWKSISILDLYGFQTFQKNGFEQFYINYANERIQQHYNRHLFKLEQEDYELDGIDWTKVDFEDNQGCLDLFEKKPQGLLSLLDEESNLPNASDLTFANKLKHHLHPNPCFKGERGRAFRIRHYAGEVLYDTNDFLEKNRDTMSSDCIQFLSSCNSELLQLFSKMFNQSQKQSVATKFKVQLFKLIHQLESTMPHFIRCIAPNTKQLPDIYDEGVVLRQLRCYGVPEILRLSRAGYPTRMTHQEFSRRYVFMLSEANVSHDPLSISVAVLQKFNIPSEMYHVGYTKLYLRAGQIDALENMRKQILQGIIGIQKCFRGHQARGCFCELKNGVTTLQSCTAIIRGENSRRKYGAMSKSSITIYSRKLEEIHAIIRLQSVIRGWRVRKDASHVNRLKKYPENAKPRRKSFMKIIPEVQEEATRANEAQWSSKEDGLDCYGYQRKRVLCDSEKRHTIVATEDGVGRGEGWVVRWREVREECPFCRLKDLSKEPVQNLLSALAELQRQVDKADAVVEQKEEEYIELREQLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLASENATVQPVRHDFVLPRGYDSEDTSMGSRTPGGSTPMLSGNLSITDAGRQVNGNLTTISNLMKEFEQRTQDFDGEVKAMHDVKPGQCANTNSVEELRKLKQRFEGWKKQYKIRLRDTKARLYKSESEKSWRAWWKLGSRA 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00222 1190 ProSiteProfiles IQ motif profile. 791 818 IPR000048 GO:0005515
Vian5g00222 1190 CDD MYSc_Myo8 203 775 IPR036022 -
Vian5g00222 1190 Gene3D Kinesin motor domain 140 280 IPR036961 -
Vian5g00222 1190 Gene3D - 315 374 - -
Vian5g00222 1190 FunFam Myosin heavy chain 315 371 - -
Vian5g00222 1190 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 136 185 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 Gene3D - 792 843 - -
Vian5g00222 1190 PANTHER MYOSIN 297 1179 - -
Vian5g00222 1190 Gene3D Kinesin motor domain 298 715 IPR036961 -
Vian5g00222 1190 Pfam Myosin head (motor domain) 299 775 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 Pfam Myosin head (motor domain) 191 279 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 Gene3D Myosin VI head, motor domain, U50 subdomain 376 655 - -
Vian5g00222 1190 SMART iq_5 788 813 IPR000048 GO:0005515
Vian5g00222 1190 SMART iq_5 851 873 IPR000048 GO:0005515
Vian5g00222 1190 ProSiteProfiles Myosin motor domain profile. 189 787 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 MobiDBLite consensus disorder prediction 19 37 - -
Vian5g00222 1190 Coils Coil 975 1030 - -
Vian5g00222 1190 Gene3D - 500 677 - -
Vian5g00222 1190 PRINTS Myosin heavy chain signature 543 571 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 PRINTS Myosin heavy chain signature 219 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian5g00222 1190 MobiDBLite consensus disorder prediction 1066 1086 - -
Vian5g00222 1190 Pfam IQ calmodulin-binding motif 854 871 IPR000048 GO:0005515
Vian5g00222 1190 Pfam IQ calmodulin-binding motif 793 806 IPR000048 GO:0005515
Vian5g00222 1190 Coils Coil 12 32 - -
Vian5g00222 1190 Gene3D - 720 788 - -
Vian5g00222 1190 ProSiteProfiles IQ motif profile. 852 880 IPR000048 GO:0005515
Vian5g00222 1190 MobiDBLite consensus disorder prediction 19 60 - -
Vian5g00222 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 874 IPR027417 -
Vian5g00222 1190 SMART MYSc_2a 183 788 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00222 Vian-Chr5 4435265 4460620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00222 1 279 Myosins gene family AT5G54280 50.820 4.93e-84 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00222 K10357 - gmx:100802074 1246.49