Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00219 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAACACAAGAAGATTTTAGAAGGACTTCTTAAACTACCAGAGAATAAGGAGTGTGCTGACTGCAAAGCTAAGGGCCCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATATGCATGCAGTGTTCTGGTATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCAGCAACTTTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAACATATGGGAAATGAGAAGGCAAACAATTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGGCCCGTGGAAAGGGTTGGCCATAATCATGCAGTTGTGTCTGAGAATACTTTTGAGGATAGGAAGAAAATCAAACCTTCAAATGCTATTCCTGCTACAAGAATTTGTGTTCCTGCTCCTCCCAGAGGGCCTGAACTGGTAGCTCCCGTGGGAAAACCTCAACATGTTGATAAAGCAGAACCTGTTTCACCACCACCACAAGTTGAAACTTCAAAACAGACTACTGACACAACACAAAACTCCCCTCCAAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCCATGGATGATCCAAGTGAAAAGGGCTCAGGTGCAGCTGAAGCTATTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTACAGAGGCATTGCCAGCTGCGAAGAATGATACCTCAAAATCAGTTGACAGTAGACCTCAGTCCACTTCGGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACAACAAGTTCAACTCCAGAAAACCCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGGGAAATGTTGTGTCTCCATTTGCAATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGACTCTTCTAATGGCTGCTGCTGCTAAATCTGGTGGTGTGGATTCCAAGTACTTGGCCAGCTTACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTAAATCCGCCAGTGGGGATTCCAAAAACCCAGCTGGCATACAAAAACCTGGATCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTGGCTATCCAGTCCCTGGTATAATGCCCATGGGAAATCAGGAAGAGTTGCAAAAACTAATGCAGACAATGAACTTGACTGCAGCGCATTCAGCAGGGAGTTCAGTTCAGTATCCACAATCTAGTTACTATCCTATGGGGCAAGTTGCTCCAGTTAATGGTTCGTCTACAACGGGTGGAGCAAGTAAACCTGAGTCGGGATCTCTGGTATCATCAGCATATCCAATATCATCGACCACTTCAAAGACAGGGAGCGATTATGATTTCTCCTCTTTAACACAAGGAATGTTTGCAAAGCACTAA 1503 0.4351 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQHMGNEKANNYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKRPVERVGHNHAVVSENTFEDRKKIKPSNAIPATRICVPAPPRGPELVAPVGKPQHVDKAEPVSPPPQVETSKQTTDTTQNSPPKVDFSTDLFDMLSMDDPSEKGSGAAEAIADDNNWAGFQSATEALPAAKNDTSKSVDSRPQSTSGIEDLFKDSPSVTTSSTPENPQKDVKNDIMSLFEKGNVVSPFAMHQQQLAMLAQQQTLLMAAAAKSGGVDSKYLASLQQQSLLMAAAAKSASGDSKNPAGIQKPGSNIPVQSWPAAGYPVPGIMPMGNQEELQKLMQTMNLTAAHSAGSSVQYPQSSYYPMGQVAPVNGSSTTGGASKPESGSLVSSAYPISSTTSKTGSDYDFSSLTQGMFAKH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00219 500 CDD ArfGap 19 117 - -
Vian5g00219 500 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vian5g00219 500 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vian5g00219 500 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vian5g00219 500 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vian5g00219 500 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vian5g00219 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 361 IPR044520 GO:0005096
Vian5g00219 500 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vian5g00219 500 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vian5g00219 500 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Vian5g00219 500 MobiDBLite consensus disorder prediction 267 309 - -
Vian5g00219 500 MobiDBLite consensus disorder prediction 172 228 - -
Vian5g00219 500 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vian5g00219 500 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00219 Vian-Chr5 4376931 4383722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00219 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 9.99e-29 114