Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00209 ATGGATCACACAATTTTCATATGGAATGTATGGAGCAGAAATCAGAAGAAAGCGTGTATGCTAAACTTCCACAATGCTGCAGTCAAAGATGTGAAATGGTCTCCGCAAGGCCACTTTCTACTTTCTTGTGGATATGATTGCACGACAAGATTGGTCGACGTTGAAAAGGGATTGGAGACTCAGGTTTTCAGAGAAGATCAAATTGTTGCAGTTATAAAGTTCCATCCAGACAATTCAAATATCTTCCTTTCTGGAGGTTCAAATGGCCATATCAAATTGTGGGATGTCAGAACGGGCAAAGTAGTTCATAATTATAATCGAAATTTAGGTCCAATTCTCGATCTTGAGTTCACAATGAATGGGAAGCAATTCATTTCTTCTTGTGATGTATCTCAAAGTAATATCAGTGAGAACGCTATTATTGTTTGGGATGTTTCAAGGGAGGTACCATTGTCTAACCAGGTTTATGCAGAAGCTTATACATGTCCTTGCGTGAGGCTGCACCCATTTGATTCAATTTTTGTTGCCCAGTCAAATGGAAATTATGTTGCAATCTTTACTTCCACCCCACCTTACAGGCTCAACAAATATAAGCGATATGAGGGCCATGTGATCTCTGGGTTCCCAATCAAGTGTAATTTCAGCTTGGATGGGAAAAAACTTGCTTCTGGCTCTTCAGATGGTTCTATCTTCCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGATCAAGCATGCATAGATGTTGCCTTCCACCCCATTATACCTAATATTATTGCTTCATGCTCGTGGGATGGAAGTATTTTGGTATTTGAGTAG 834 0.3945 MDHTIFIWNVWSRNQKKACMLNFHNAAVKDVKWSPQGHFLLSCGYDCTTRLVDVEKGLETQVFREDQIVAVIKFHPDNSNIFLSGGSNGHIKLWDVRTGKVVHNYNRNLGPILDLEFTMNGKQFISSCDVSQSNISENAIIVWDVSREVPLSNQVYAEAYTCPCVRLHPFDSIFVAQSNGNYVAIFTSTPPYRLNKYKRYEGHVISGFPIKCNFSLDGKKLASGSSDGSIFLYDYQSSKVVKKIKAHDQACIDVAFHPIIPNIIASCSWDGSILVFE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00209 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 21 62 IPR001680 GO:0005515
Vian5g00209 277 Gene3D - 1 277 IPR015943 GO:0005515
Vian5g00209 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Vian5g00209 277 Pfam WD domain, G-beta repeat 199 234 IPR001680 GO:0005515
Vian5g00209 277 SMART WD40_4 98 144 IPR001680 GO:0005515
Vian5g00209 277 SMART WD40_4 56 95 IPR001680 GO:0005515
Vian5g00209 277 SMART WD40_4 237 277 IPR001680 GO:0005515
Vian5g00209 277 SMART WD40_4 193 234 IPR001680 GO:0005515
Vian5g00209 277 SMART WD40_4 14 53 IPR001680 GO:0005515
Vian5g00209 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Vian5g00209 277 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 277 - -
Vian5g00209 277 SUPERFAMILY WD40 repeat-like 2 276 IPR036322 GO:0005515
Vian5g00209 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 243 IPR001680 GO:0005515
Vian5g00209 277 Pfam Eukaryotic translation initiation factor eIF2A 13 146 IPR013979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00209 Vian-Chr5 4199934 4204639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00209 2 147 U-box Gene Family AT2G33340 27.333 1.48e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00209 K24742 - gmx:100790592 535.028