Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00206 ATGTTGCAAGAGAATTTGAGCTCTCCAGGCACCACGTTTCAGCAAGAAAGTGGGAATAACAATATTGCGTTGTCTCATCATCAACAAGTTCATTGGAGGCCAGAAAAATTGTTCTCTGCGGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTCAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTCGGTAACCCTTCTTCAATATTGCAAGGACTTTTGGGACATGAGAGCAATAACCAACAACCCCACCAAGGTGGTAGTGCTTCTTTTGAGAATCGTTCCATGAATTTTCCTTACTCAGCAACAAGCTATGGATTAAGCTCAAACATTGAGTTAGTGCCTTCTTGGTCAAAGGTGCCTCAGTTCTTAAGAGCTTCACCACCAAAACAACCACCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAACCTGCTATAAAGGATGCTCGATCCAGCTTCATCTCCTCTTTGCAAACCCCTTTCTCGCCATCAAATTTCGATGTTCAATCAAAGAATCTATCTGAAGTTAGGGAGTCGGGTGTGGTGAAGAAAAGTGGGAGTGAAACAGCACCAAAAAGGCCCAGGAACGAAAACCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAGTCACCGTTTTAAGCACCCCCTATATGAAAACCGGTGCTCCCATACAGCATCAGCAGAGTTCTGGTAAATCGAAGGAATCTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTACAGATAG 1035 0.4415 MLQENLSSPGTTFQQESGNNNIALSHHQQVHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGHESNNQQPHQGGSASFENRSMNFPYSATSYGLSSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSEPAIKDARSSFISSLQTPFSPSNFDVQSKNLSEVRESGVVKKSGSETAPKRPRNENPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKTGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00206 344 MobiDBLite consensus disorder prediction 91 112 - -
Vian5g00206 344 FunFam Transcription factor bHLH123 family 234 296 - -
Vian5g00206 344 MobiDBLite consensus disorder prediction 289 312 - -
Vian5g00206 344 CDD bHLH_AtbHLH_like 230 281 IPR045239 -
Vian5g00206 344 MobiDBLite consensus disorder prediction 203 232 - -
Vian5g00206 344 Gene3D - 234 296 IPR036638 GO:0046983
Vian5g00206 344 SMART finulus 235 279 IPR011598 GO:0046983
Vian5g00206 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vian5g00206 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 292 IPR036638 GO:0046983
Vian5g00206 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 63 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00206 Vian-Chr5 4124013 4126564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00206 1 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.263 2.80e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00206 - - gmx:100818424 605.134