Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00204 ATGACAGAGTTCAAGAATGAAGTGAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAAGCTTCTAGCTTGTTGCGTTCAGGAAGAGGACAGAATGCTAGTCTATGAATACATGACTAACCGTAGTTTGGATTGGATGATATTTGATGATACTAAAAGCAAACTGCTAGATTGGCCGAAGCGCTTCAACATTATCTGTGGAATTGCCCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGATCTTAAAGCAAGTAATGTTCTACTTGATGACCAGATAAATCCAAAAATATCGGATTTTGGTATTGCAAGAATTTTTGGAGGAGATCAAACTGAAGGAAACACAAAGCGAGTAGTTGGAACTTATGGCTACATGGCACCAGAATATGCAGCAGATGGTCTTTTTTCTGTAAAATCTGATGTTTTCAGTTTTGGTATTTTGCTGCTGGAGATTATAAGTGGAAAGAGAAACAGAGGTTTCTATCTTGAAAACCAATATCCTAACCTTGTAACACATGCATGGAGTCTATGGAAAGAGGGTAGGGCTATAGAGATGGTTGACTCAAGTATAGAGGACTCATGTGTTTTATCAGAGGTTTTGCGTTGCATCCACGTCAGTCTCTTATGTGTCCAACAGCATACAGAGGATAGGCCTGTAATGTCTGCTGTGGTGCTAATGTTGGGGAGTGAAAGTGAATTGGCTGAGCCAAAAGAACCTGGTTTCTTCATAAAGAATGATCAAGCTGCAGCAACTTCTTTCTCAGGTCGAACTGTCTCAACGAATGAAATAACTATCACATTATTAGAAGCTAGATGA 837 0.3895 MTEFKNEVKLIAKLQHRNLVKLLACCVQEEDRMLVYEYMTNRSLDWMIFDDTKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDQINPKISDFGIARIFGGDQTEGNTKRVVGTYGYMAPEYAADGLFSVKSDVFSFGILLLEIISGKRNRGFYLENQYPNLVTHAWSLWKEGRAIEMVDSSIEDSCVLSEVLRCIHVSLLCVQQHTEDRPVMSAVVLMLGSESELAEPKEPGFFIKNDQAAATSFSGRTVSTNEITITLLEAR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00204 278 SMART serkin_6 2 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00204 278 Gene3D Transferase(Phosphotransferase) domain 1 39 248 - -
Vian5g00204 278 SUPERFAMILY Protein kinase-like (PK-like) 2 234 IPR011009 -
Vian5g00204 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Vian5g00204 278 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Vian5g00204 278 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 257 - -
Vian5g00204 278 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00204 278 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 39 242 - -
Vian5g00204 278 Pfam Protein tyrosine and serine/threonine kinase 2 232 IPR001245 GO:0004672|GO:0006468
Vian5g00204 278 Pfam Domain of unknown function (DUF3403) 237 278 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00204 Vian-Chr5 4091477 4092664 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00204 2 252 Receptor kinase-like Gene Family AT4G23230 60.317 2.25e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00204 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00204 - - gmx:100775648 500.745