Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00202 ATGGGTGTTATTCATGCTTTTGTGATTATATTTGCATGCATGCTTGTTCTCTCACTAGAAATTTCGGGAGCAAATGATTCAATCAACGCGGCCCAGTTTCTGAGGGATGGGAATACTTTGGTATCAAAAGGTGGAAAGTTTGAACTTGGATTCTTCAGCCCTGGTAGTTCCCAGAAACGTTATCTGGGAATTTGGTACAAGAATATCCCAGTTACGACGTATGTTTGGGTTGCTAATGGGGCCAACCCCATCAATGATTCCTCAGGCATCTTAACAGTGAACACCACAGGCAATCTTGTTCTCACCCAAAATGGTTCTCTTGTTTGGCACTCCAACAACTCTCACAAACAAGCACAGAATCCGGTGGTAGAAATGTTGGACAGTGGCAATCTTGTGATAAGAAACGAGGGAGAAACAAACCCAGAAGAGTATTTGTGGCAAAGCTTTGATTATCCATCTGATACACTCTTGCCAGGGATGAAGTTAGGATGGGACCTCCGAACTGGTTTGGAACGGAAATATACAGCATGGAAGAGTCAAGACGATCCATCCCCAGGTGATGTATCTCGGGTTTTGAAACTCTATAACTATCCTGAGGTTTATATGATGAAGGGTACACAAAAGTTGCTGAGGTATGGACCATGGAATGGCGAATATTTTAGTGGAATGCCAGATCTACTGAATAACACCATTTTCGGCTTGAGTTTTGTCAGCAACGAAGATGAGATTTACTACGCGTATACCCTCGTTAATGATTCTGTCCCCACCAGAACTGTTACAAACCAATCAGGTACTATTGTTCGTTATGTGTGGAAGGAGGATGAGAAAACATGGAAAACATACAGAACGTACCCGAAAGAGTCTTGCGACAATTATGACTCCTGTGGACCTAACGGATTATGTGTACGAACTCAATCACAGCCTTGCAATTGTTTGAAAGGTTTCAGTCCAAAATCACCACAAAATTGGAATTCATCGGATTGGAAGGAAGGATGTGAGCGCAATAAAGCGTTGAATTGCAGTAGTGATGTGTTTGTCCTATTTAAAGGGCTGAAAGTTCCAGCCACTACAGATACTTGGTTGAATAAGAGTATTGGTCTAAAGGAATGCAAAGTGAAGTGCTTGAAAGATTGTTCTTGCATGGCCTATACTAATTCAGATATCAGAAATGGAGGTAGTGGTTGTGTCTTGTGGTTTGGAGATCTCATTGACATGAAACAGATTGAAACTGGTGGACAAGACCTGTATATCAGGATGAATGCTTCGGAGGCAGAACCTGGACCGAGCAAGCACACACTAACGATAGTTGCTTCTACCGTTGCTGCAATTTGTGGTGTTCTTATACTTCTAAGTACGTATATTATTTGCAGGCTCCAGAGGAACAAAGCTGGAATTTCATGCACAGAAGATATAAGTAAAACACATGTGGATGGTCTGGATGTCCAACTGTTTGATCTAGTAACAATTGGAAAGGCCACTAATAACTTCTCCACAGAGAATATAATAGGAGAAGGTGGTTTTGGACATGTATACAAGGGAATAATCGACGGGAAAGAAATTGCTGTAAAGACTCTATCAAGAAGCTCATGGCAAGGTGTGACAGAGTTCATCAATGAAGTAAACTTGACTGCAAAACTTCAGCATCGGAATCTTATTAAACTTCTTGGTTGCTGCATTCGAGGAGAAGAAAGAATGCTCATTTATCAGTACATGGAAAATGGCAGCCTAGACTCCCTTATTTTTGATGATAAAAGAGGTAAATTTCTGGAGTGGCCTCAACGGTTCCAAATAATTTGCGGAATTGCAAGGGGCCTTGTGTACCTTCATCAAGATTCCCCACTGAGGATCATCCACAGGGATCTCAAAGCTAGTAACATCTTACTCGATAAAACGTTCAATCCGAAAATATCAGACTTTGGTGTGTCGAGATCTTTTGGAGTAGACCAATTTGAAGGAAGCACAAGTAGAGTAGTGGGGACCTGTGGGTATATGGCGCCAGAATATGCAGTTGATGGATTATTTTCTGAAAAATCTGACGTATTTAGCTTTGGAATTTTGGTGTTGGAGATTGTCTGTGGGAAGAGAAACAGAGGACTTTATCAGAAAGATAAGAGTCTTAACCTTGTTGCTCATTCATGGACATTATGGAAAGCGGGCAAGGCAATAGATTTCATTGCCTCGAACATGAAGACATCATCGTGCGTTATGTCTGAAGTACTGCGTTGTCTCCATGTCGGTCTTTTGTGTGTGCAACAGTACCCAGATGATAGGCCTACAATGAAGTCTGTGATTCTAATGTTGGAGAGTCACATTGCACTGGCTGAGCCAAAAGAACCTGGTTTCCTTTCGAGAAATGTGTTACCTAAAGATTTAGGCTCAAATATGAACGACACAAGTTCAACCAACGAAGTGACCATTACTCTGTTAGAACCTCGATGA 2439 0.4157 MGVIHAFVIIFACMLVLSLEISGANDSINAAQFLRDGNTLVSKGGKFELGFFSPGSSQKRYLGIWYKNIPVTTYVWVANGANPINDSSGILTVNTTGNLVLTQNGSLVWHSNNSHKQAQNPVVEMLDSGNLVIRNEGETNPEEYLWQSFDYPSDTLLPGMKLGWDLRTGLERKYTAWKSQDDPSPGDVSRVLKLYNYPEVYMMKGTQKLLRYGPWNGEYFSGMPDLLNNTIFGLSFVSNEDEIYYAYTLVNDSVPTRTVTNQSGTIVRYVWKEDEKTWKTYRTYPKESCDNYDSCGPNGLCVRTQSQPCNCLKGFSPKSPQNWNSSDWKEGCERNKALNCSSDVFVLFKGLKVPATTDTWLNKSIGLKECKVKCLKDCSCMAYTNSDIRNGGSGCVLWFGDLIDMKQIETGGQDLYIRMNASEAEPGPSKHTLTIVASTVAAICGVLILLSTYIICRLQRNKAGISCTEDISKTHVDGLDVQLFDLVTIGKATNNFSTENIIGEGGFGHVYKGIIDGKEIAVKTLSRSSWQGVTEFINEVNLTAKLQHRNLIKLLGCCIRGEERMLIYQYMENGSLDSLIFDDKRGKFLEWPQRFQIICGIARGLVYLHQDSPLRIIHRDLKASNILLDKTFNPKISDFGVSRSFGVDQFEGSTSRVVGTCGYMAPEYAVDGLFSEKSDVFSFGILVLEIVCGKRNRGLYQKDKSLNLVAHSWTLWKAGKAIDFIASNMKTSSCVMSEVLRCLHVGLLCVQQYPDDRPTMKSVILMLESHIALAEPKEPGFLSRNVLPKDLGSNMNDTSSTNEVTITLLEPR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00202 812 Gene3D Phosphorylase Kinase; domain 1 471 570 - -
Vian5g00202 812 Pfam PAN-like domain 340 405 IPR003609 -
Vian5g00202 812 SUPERFAMILY Protein kinase-like (PK-like) 480 768 IPR011009 -
Vian5g00202 812 SMART serkin_6 496 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00202 812 Pfam Protein tyrosine and serine/threonine kinase 498 764 IPR001245 GO:0004672|GO:0006468
Vian5g00202 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 775 - -
Vian5g00202 812 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Vian5g00202 812 ProSiteProfiles Protein kinase domain profile. 496 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00202 812 Gene3D - 20 149 IPR036426 -
Vian5g00202 812 SMART ntp_6 340 419 IPR003609 -
Vian5g00202 812 CDD PAN_AP_plant 338 418 - -
Vian5g00202 812 Gene3D Transferase(Phosphotransferase) domain 1 571 778 - -
Vian5g00202 812 ProSitePatterns Protein kinases ATP-binding region signature. 502 523 IPR017441 GO:0005524
Vian5g00202 812 Pfam D-mannose binding lectin 73 178 IPR001480 -
Vian5g00202 812 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 461 570 - -
Vian5g00202 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vian5g00202 812 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Vian5g00202 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Vian5g00202 812 CDD B_lectin 32 152 IPR001480 -
Vian5g00202 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vian5g00202 812 SMART blect_4 31 152 IPR001480 -
Vian5g00202 812 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Vian5g00202 812 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 758 - -
Vian5g00202 812 CDD STKc_IRAK 502 768 - -
Vian5g00202 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00202 Vian-Chr5 4044713 4047857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00202 422 781 Receptor kinase-like Gene Family AT4G23230 49.311 7.55e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00202 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00202 - - vra:106754325 1562.74