Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00199 ATGTGCATATTTTATGGCCATGTTTACGTACTGTTATTCTCTAACTCATCAGAGGCTGCAAGAAAATTTTGCAACAAGCATTACAAAAATATGCAGAGGAGGGAAGTGATAGATTTGCCAACTTTCGATTTCTCAGTCTTAGCCAGTGCCACTGGAAACTTTTCAACCGAAAACAAGCTTGGAGAAGGGGGTTTTGGACCAGTATACAAGGGCACACTGATAGATGGGAAGGAGTTAGCTGTGAAAAGGCTTTCTCAGAAATCTTTGCAAGGGTTGGATGAGTTCAAAAATGAAGTTGCATTGATGGCCAACCTTCAGCATCGTAATCTGGTAAAACTACTTGGTTGCTGCATTGAAGGAGAAGAAAAAATGCTAATATATGAGTACATGCCCAACCACAGCTTGGACTACGTTGTTTTTGATGAAGGTAAAAGGAAGTTCTTAGATTGGCGTAAGCGTTTCAACATCATTAGTGGCATTGCTCGAGGACTCCTTTATCTTCACCAAGACTCTACATTGAGGATTATTCATAGAGATCTAAAACCTAGTAATGTTTTACTAGATGCTAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCTCGATTGGTTTTGGGAGATCAAGTTGAGGCAAAAACGAATAGGGTGGCAGGAACATATGGCTACATACCTCCTGAATATGCTGTGCGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTCATTGTACTAGAGGTTCTATGTGGTAAGAAAAACAGAGAATTTTCGGACCCAGAACACTGCAACAATCTTCTTGGGCATGCATGGAAATTATGGAGCGAAGACAGGGCACTGGAACTAGTACTAGATGAAGTGTTAGAAGAACAGTGCACGGTGTTTGAAGTTATAAGATGCATACAAGTAGGTCTATTATGTGTACAACAAAGACCAGAGGATAGGCCAGACATGTCATCTGTGGTTTTAATGTTAAATGGCGATAAATTATTGCCAAACCCAAAGGCTCCTGCATTTTACACTGAAATTGATGATGTTAGCAAAGCAAATTCTCCATCAGCAAATCACAAACCGTTCTCAGATAATGAACTTTCCATCACAGTGTTAAACCCAAGATAG 1122 0.4002 MCIFYGHVYVLLFSNSSEAARKFCNKHYKNMQRREVIDLPTFDFSVLASATGNFSTENKLGEGGFGPVYKGTLIDGKELAVKRLSQKSLQGLDEFKNEVALMANLQHRNLVKLLGCCIEGEEKMLIYEYMPNHSLDYVVFDEGKRKFLDWRKRFNIISGIARGLLYLHQDSTLRIIHRDLKPSNVLLDANLDPKISDFGLARLVLGDQVEAKTNRVAGTYGYIPPEYAVRGHFSVKSDVFSYGVIVLEVLCGKKNREFSDPEHCNNLLGHAWKLWSEDRALELVLDEVLEEQCTVFEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGDKLLPNPKAPAFYTEIDDVSKANSPSANHKPFSDNELSITVLNPR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00199 373 CDD STKc_IRAK 60 328 - -
Vian5g00199 373 FunFam - 130 335 - -
Vian5g00199 373 SUPERFAMILY Protein kinase-like (PK-like) 36 326 IPR011009 -
Vian5g00199 373 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 129 - -
Vian5g00199 373 SMART serkin_6 54 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00199 373 Gene3D Phosphorylase Kinase; domain 1 12 129 - -
Vian5g00199 373 Pfam Protein tyrosine and serine/threonine kinase 56 324 IPR001245 GO:0004672|GO:0006468
Vian5g00199 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 372 - -
Vian5g00199 373 ProSiteProfiles Protein kinase domain profile. 54 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00199 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vian5g00199 373 Gene3D Transferase(Phosphotransferase) domain 1 130 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00199 Vian-Chr5 4026814 4028287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00199 42 373 Receptor kinase-like Gene Family AT4G23140 51.895 1.64e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00199 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00199 - - ccaj:109819020 574.704