LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00196	ATGATAGGATCACAAAGGATATGCTTTACTTTCTTGTTAATGCTGAATTTCAGGTCATTCATTACAAAGGCTGAAGAACAGACATACCAGGGAAGTAGCTGCGATAACACCGCCCAACAATCTCTCGGCAGTGCATACCAAACCAACCTTGATAGAATCCTGACCTGGATGTCCTCAGATTCAGGCACAAGCAATGGTTACAACATCACCACCATAGGCTCCAACAATAGCTCTGTGTACGGCCTCTATTATTGTGGGAGTGACTTGACTGGATACATTTGTCAAGTTTGTATTTCCACTGCTGCAAGAGAAGCCCATCGGCTGTGCTCCAATAGGGTGTCTGCTGTGGTGTGGCATGATTACTGCGTTATAAGGTACTCAAATGAGAACTTCTTTGGGAAAGCTATGACATATCCAACATGGCATATTCTTGGAACAAAAAACATATCGAATATAACAGAGATTCAGATAGGTGAGGATTTTTTGAGAAGTTTGATCAGAAAAGCAACTAATGGAACCAACCAGTTGTATTATAGGGATGGCTTCAATTTGAGTGCCACTGAGAGTAGATATAGCGTGGTGCAATGCTCTAGAGATCTCACAAATGAAGTGTGCAGACAATGTTTGGAGGACATACTAGCTGAACTTCCTAAATGCTGTGAAGAAAAACTAGCATGGAATATTTGGTCTGGAAGTTGTTTGATTCGGTATGATGATTATATGTTCTACCTTTTTAACACCCAACCACCTTCAGCTCCTGCTCCCAATGTACAAGATAAACAAGGGAGTGATAACAGGTCAAAAATATTGATCATTACATTCAGTGTGGCCGGGCCAATAATTGTACTATGTTTCAGCGTGTATTCCTTCTGGCATAGGAAAAGCGTGAGAAAAGAACGGCGTCCTCTACCATCATTTCACAAAATTCAACCAGGGGAAATGTGGAACACGGACCTGCCTAGAATCCCATTAATCACAATTCTAGAGAGTACTGATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGCGGATTCGGCTCCGTTTACAAGGGAACTCTGCCTGATGGAACGCAAATTGCAGTAAAAAGACTCTCAGAATTTTCTGGTCAAGGCTCAGAGGAGTTCAAAAACGAAGTAATGTTTATAGCTAAATTGAGGCATCGTAACCTAGTAAGACTTTTAGCATGTTGCTCGGAGGGAAATGAAAAGATACTCGTATATGAGTATTTGCAGAATAAAAGTCTCGACTTTCACCTATTTGATGTTGAGAGAAGAAAACAATTCGATTGGAAACTAAGATTAAGCATTATCAATGGAATACCAAGAGGTATGTTTTACCTTCATGAGGACTCTCAACTGAGAGTAATTCATAGAGATCTCAAAGCTAGCAACGTTCTATTAGACCATGACATGAATCCTAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAGTGGGACAGAACCAAGCAAATACAAAACGAGTTATGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGAAGGACTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATGGTAGATTCTTTCTGTCAGATGGTCAAATTCTCCTTGTATACGCTTGGAGAATATGGTATGAAGGAAAATGTTTGGAATTGATGGATCCAATACTAGAAAAATCCTTCATAGGCAGTGAAGTACAGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGACGCAAGAGATAGACCAACCATGTCCGATGTTGTTGTAATGCTGGTGAGTGACACAGTGGCCATTCCAAAACCCAAGCACCCAGCCTTTTCAGTTGGAAGAATGGCCTCAGAGAAAGGCTCCCCATATAGAAGTTCCAACAATCTTTCCATTAATGATATAACATCCTCAATTACTTTACCTAGGTAA	1956	0.4024	MIGSQRICFTFLLMLNFRSFITKAEEQTYQGSSCDNTAQQSLGSAYQTNLDRILTWMSSDSGTSNGYNITTIGSNNSSVYGLYYCGSDLTGYICQVCISTAAREAHRLCSNRVSAVVWHDYCVIRYSNENFFGKAMTYPTWHILGTKNISNITEIQIGEDFLRSLIRKATNGTNQLYYRDGFNLSATESRYSVVQCSRDLTNEVCRQCLEDILAELPKCCEEKLAWNIWSGSCLIRYDDYMFYLFNTQPPSAPAPNVQDKQGSDNRSKILIITFSVAGPIIVLCFSVYSFWHRKSVRKERRPLPSFHKIQPGEMWNTDLPRIPLITILESTDNFSEASKLGEGGFGSVYKGTLPDGTQIAVKRLSEFSGQGSEEFKNEVMFIAKLRHRNLVRLLACCSEGNEKILVYEYLQNKSLDFHLFDVERRKQFDWKLRLSIINGIPRGMFYLHEDSQLRVIHRDLKASNVLLDHDMNPKISDFGLARAFEVGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNGRFFLSDGQILLVYAWRIWYEGKCLELMDPILEKSFIGSEVQRCIQIGLLCVQEDARDRPTMSDVVVMLVSDTVAIPKPKHPAFSVGRMASEKGSPYRSSNNLSINDITSSITLPR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00196	651	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	45	645	-	-
	Vian5g00196	651	ProSitePatterns	Protein kinases ATP-binding region signature.	340	362	IPR017441	GO:0005524
	Vian5g00196	651	ProSiteProfiles	Gnk2-homologous domain profile.	137	242	IPR002902	-
	Vian5g00196	651	Gene3D	Transferase(Phosphotransferase) domain 1	410	611	-	-
	Vian5g00196	651	Pfam	Protein tyrosine and serine/threonine kinase	338	602	IPR001245	GO:0004672\|GO:0006468
	Vian5g00196	651	CDD	STKc_IRAK	340	604	-	-
	Vian5g00196	651	SUPERFAMILY	Protein kinase-like (PK-like)	310	604	IPR011009	-
	Vian5g00196	651	Gene3D	Phosphorylase Kinase; domain 1	297	409	-	-
	Vian5g00196	651	SMART	serkin_6	334	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00196	651	Gene3D	-	141	242	IPR038408	-
	Vian5g00196	651	Gene3D	-	27	131	IPR038408	-
	Vian5g00196	651	Pfam	Salt stress response/antifungal	161	240	IPR002902	-
	Vian5g00196	651	Pfam	Salt stress response/antifungal	34	128	IPR002902	-
	Vian5g00196	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Vian5g00196	651	FunFam	cysteine-rich receptor-like protein kinase 10	410	611	-	-
	Vian5g00196	651	ProSiteProfiles	Protein kinase domain profile.	334	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00196	651	FunFam	Cysteine-rich receptor-like protein kinase 10	296	409	-	-
	Vian5g00196	651	Pfam	Domain of unknown function (DUF3403)	606	651	IPR021820	GO:0004674
	Vian5g00196	651	ProSiteProfiles	Gnk2-homologous domain profile.	28	131	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00196	Vian-Chr5	3950364	3953265	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00196	11	651	Receptor kinase-like Gene Family	AT4G05200	40.180	8.21e-169	497

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vian5g00196		PK_Tyr_Ser-Thr	6.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00196	-		-	pvu:PHAVU_011G194300g	973.77