Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00195 ATGTTTATAGCTAAATTGAGGCATCGCAATCTTGTAAGACTTCTGGCATGCTGCTTAGAGGAAAATGAAAAGATACTGGTATATGAGTATTTGCCAAATAAAAGTCTCGATTTTCACTTATTTGATGTTGAGAAAAGAAAACAATTCGATTGGAAACTAAGATTAAGCATTATCCATGGAATAGCAAGAGGTATTTTATACCTTCATGAAGACTCTCAACTCAGACTAATCCATAGAGATCTCAAAGCCAGCAACGTTCTATTAGACCGTGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAGTGGGACAGAACCAGGCAAATACAAAACGAGTGATGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGGAGGACTATTTTCAGTGAAATCTGATGTCTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAACGGTGGATTCTACCTGTCAGATAGTCAAAATCTTCTTGTATACGCATGGAGAACATGGAATGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTGGAAAAATCTTTCATGCGAAATGAAGTAGAAAGATGCATAGAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAGAGATAGACCAACCATATCCGATGTTGTAGTAATGCTGGCGAGTGACACAGTGGTCGTTCCAAAACCCAAGCACCCAGCATTTTCAATTGGAAGGATGGCCTCAGAGGACATCTCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATATAACATCCTCGATTACTTTACCGAGGTAA 819 0.3846 MFIAKLRHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDVEKRKQFDWKLRLSIIHGIARGILYLHEDSQLRLIHRDLKASNVLLDRDMNPKISDFGLARAFEVGQNQANTKRVMGTYGYMAPEYAMGGLFSVKSDVFSFGVLVLEIICGRKNGGFYLSDSQNLLVYAWRTWNEGKCLELMDPMLEKSFMRNEVERCIEIGLLCVQEDARDRPTISDVVVMLASDTVVVPKPKHPAFSIGRMASEDISTSKSSKNLSINDITSSITLPR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00195 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Vian5g00195 272 Pfam Protein tyrosine and serine/threonine kinase 3 224 IPR001245 GO:0004672|GO:0006468
Vian5g00195 272 SMART serkin_6 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00195 272 Pfam Domain of unknown function (DUF3403) 227 272 IPR021820 GO:0004674
Vian5g00195 272 Gene3D Transferase(Phosphotransferase) domain 1 31 233 - -
Vian5g00195 272 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 268 - -
Vian5g00195 272 FunFam cysteine-rich receptor-like protein kinase 10 31 232 - -
Vian5g00195 272 PIRSF ILK 1 237 - -
Vian5g00195 272 SUPERFAMILY Protein kinase-like (PK-like) 3 252 IPR011009 -
Vian5g00195 272 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00195 272 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00195 Vian-Chr5 3931469 3932627 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00195 3 272 Receptor kinase-like Gene Family AT4G05200 57.092 5.57e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00195 PK_Tyr_Ser-Thr 1.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00195 - - var:108339140 449.514