Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00193 ATGAGGATCAAAGCAGAAATATTCATGATCCCTATTGGGATTAGTCTTAGTTTCATGTTTCTCCTTTTCACCACAGCAAGTGCTCAACCACCGATTTACATGTACAATTTTTGTGAGAACTCAACTCTTCTTAGCTCCTCATACAAAGACAACGTTGAAACCCTTCTCTCATGGATAACCACAGACTCATTCAAAAGCAATGGATACAACTTCACCACTGTAAATAGCAACAACAACAACAATGATGATGCTGTTTATGGATTGTACAGCTGCAGATACGATATCACAGGGTATTTTTGCCAGTTCTGCATCACCACTGCTGCCAGTGAACTCTCTCGGAGGTGTCCCAACGCTGTAAGAGCTATCATATGGTATGATGTATGCATCATCCGTTACTCAAACCAAAGTTTCATTGGCAATGTTACTTTAACCCCAACATGGAATATTACAGGACCCAGAATAATCAAGCATTCATCAGAATCTAGGAAAGCTGAGGAGTCTGTGCAGAGTTTGATTTGGAAAGCAACCGTAGAGACGAAGAAGTTTTGGGCAGTGGATGAGTTTGATTGGGTTGACAATGAGAAAAGATATGGTTGGGTGCAGTGTGATAGGGATATTAAAAGTGATGAATGTAGTGAGTGTTTGCATACATTGTTAGACATATTTCCAGAGTGTTGTTCAACACATGCACAGTGGGCAGTTTTTGGTCCAAGTTGTGGCATCAGGATGGATGATGAGAAGTTTTACCAGACTTCAGGCGATGGAGGTTCTAGTAAGTCAAGAAAGTTTATCATTTCCTTTAGTGTGTTGGGGTCTGTAGCTCTACTATGCTTCGGTGTCTACTGCTTCTGGTACAGGAAAAGAGTCAGAAGAGATAAGATGATGTTTGATGAGGAAACATTGAATGGCGACCTTCCTACAATCCCGTTAATCGCAGTTCTACATAGTACTAATAACTTTTCAGAAGAATCTAAATTAGGGGAAGGTGGATTTGGTCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCGAAATTTTCTGGTCAGGGCACACAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGTAACCTCGTGAGACTTTTGGGATGCTGCTTAGAGGAAAATGAGAATATACTTGTATATGAGTATATGTGCAATGCAAGCCTTGACTCTCACCTCTTTGGTGGCGATGAGAAGAGAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAAAGGTATTTTATATCTTCATGAGGACTCTCGACTCAAAGTAATTCACAGAGATCTCAAAGGTAGCAATGTTCTATTAGACTATGAAATGAATCCCAAGATATCAGATTTTGGATTGGCCAGGGCATTTGAAATAGGACAGAACCAAGCAAATACAAAACGAGTAGTGGGCACCTAG 1461 0.3997 MRIKAEIFMIPIGISLSFMFLLFTTASAQPPIYMYNFCENSTLLSSSYKDNVETLLSWITTDSFKSNGYNFTTVNSNNNNNDDAVYGLYSCRYDITGYFCQFCITTAASELSRRCPNAVRAIIWYDVCIIRYSNQSFIGNVTLTPTWNITGPRIIKHSSESRKAEESVQSLIWKATVETKKFWAVDEFDWVDNEKRYGWVQCDRDIKSDECSECLHTLLDIFPECCSTHAQWAVFGPSCGIRMDDEKFYQTSGDGGSSKSRKFIISFSVLGSVALLCFGVYCFWYRKRVRRDKMMFDEETLNGDLPTIPLIAVLHSTNNFSEESKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGTQEFKNEVMFIAKLQHRNLVRLLGCCLEENENILVYEYMCNASLDSHLFGGDEKRKQLDWKLRLSIINGIAKGILYLHEDSRLKVIHRDLKGSNVLLDYEMNPKISDFGLARAFEIGQNQANTKRVVGT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00193 486 Gene3D Phosphorylase Kinase; domain 1 282 395 - -
Vian5g00193 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Vian5g00193 486 ProSiteProfiles Protein kinase domain profile. 320 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00193 486 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 82 486 - -
Vian5g00193 486 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Vian5g00193 486 FunFam Cysteine-rich receptor-like protein kinase 28 34 136 - -
Vian5g00193 486 SUPERFAMILY Protein kinase-like (PK-like) 305 486 IPR011009 -
Vian5g00193 486 Gene3D Transferase(Phosphotransferase) domain 1 396 486 - -
Vian5g00193 486 SMART serkin_6 320 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00193 486 Gene3D - 32 137 IPR038408 -
Vian5g00193 486 Gene3D - 149 248 IPR038408 -
Vian5g00193 486 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Vian5g00193 486 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 285 395 - -
Vian5g00193 486 FunFam Os07g0541700 protein 396 486 - -
Vian5g00193 486 Pfam Salt stress response/antifungal 181 244 IPR002902 -
Vian5g00193 486 Pfam Salt stress response/antifungal 44 135 IPR002902 -
Vian5g00193 486 Pfam Protein kinase domain 321 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00193 Vian-Chr5 3901863 3905643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00193 18 486 Receptor kinase-like Gene Family AT4G05200 40.873 9.14e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00193 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00193 - - var:108339138 750.74