Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00190 ATGTTTTTTCTTGGCTTCAAACTACTTGTTACAGAGGCTCAATCACCAAACTATGTGGGAGATGACTGCAGCTCCACCACCCCAAAATCTCTCAGCAGTGAATACAAAGACAACCTTAAAAGTGTTCTGACATGGTTATCCTCAGATGCAGCCACAAGCAAAGGCTATAACCATAACAGCTTTGGCAACAGCACCTCTGGTGCAGATGCTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTTTCTGGATACTTTTGTCAGTTCTGTGTTTCCACTGCTGCCAGAGAAGTTCTTCAGCGCTGCCCGGACAGGGTATCTGTTATTACATGGTATGATTTCTGCATCTTAAGGTACTCAAATGAAAACTTCTTTGGTAATGTTACAGTAGACCCATCATGGAATCATACTGGATCAAAAAATGTCTCTAGTTCGGAAGAGATTCAAAAGGGTGAGGGTTTTATGAAAAGTTTGATCAGAAAAGCTACTGTGGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTGAGAGAAGGTATGGCTTGGTTCAATGCAGTAGAGATCTCACAAGTGAAGGTTGCAGAGAGTGTTTGGAGACCATGTTAGCAAAAGTTCCCAAATGCTGTGAGCATAAGTTGGGGTGGCAAGTTTCCACTGCAAGTTGTCTCATAAAGTATGACGACTATATTTTCTACCTTCCTCCCAATCAAGCATCTTCTGTTTCTGTGCCTGATACTCAAATAGCCAAACAAAGGGGTGGTAGTAAGGCAAAACTATTGATGATTGGCTTAAGCGTGCTGGGCGCAGTAGCTTTGCTATGTTTCAGTGTTTATTGCTTCTGGTTCAGAAAAAGAACTAGAACTGGAAGAAGAACTGGTGGAGGTATCCCTGAGACCATTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATCCAGACATCTCTACAATCCCATTAATCACAATTCTACAAAGTACTGATAACTTTTCAGAAGCATCTAAGCTAGGGGAAGGTGGATTTGGCCCCGTGTACAAGGGAGTTCTACCAGATGGAAGACATATTGCAGTCAAAAGACTCTCAGAATCTTCTGGTCAAGGGTCAGAAGAATTCAAGAATGAAGTAATGTTCATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGTTTGGAGGAAAAAGAGAAGATACTAGTATATGAGTATATGACGAACGCAAGTCTCGACTTTCACCTCTTTGATGAGAGAAAGAAAAGACAGTTGGATTGGCAACTAAGATTAAGCATCATTAATGGCATAGCAAAAGGACTTTTATACCTTCACGAGGATTCTAGACTCAAAGTTATTCACAGAGATCTCAAAGCTAGTAATGTTTTATTAGATGATGAAATGAATCCTAAAATATCAGACTTTGGATTGGCAAGATCATTTGAGAAAGGCCAGAACCAAGCAAATACAAGACGAGTAATGGGCACATATGGATACATGGCTCCAGAATACGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTATGGAGTTCTTGTTCTGGAAATCATTTGTGGGAAGAAGAACAGTGGATTCTATCTATCTGAATGTGGTCAAAGTCTTACATTATATGCTTGGAAAGTTTGGTGTGAAGGAAAATGCTTGGAACTAATGGATCCAGTGTTGGAGGAAAGTTTTGTAGAGAGTGAATTTGTGAAGTGCATGCACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCCGATAGACCAACAATGTCCACTGTAGTTGTAATGCTAGCTAGTGACATGATGTCTCTTCCAAAACCTAACCAACCAGCATTTTCAGTAGGAAGAATGACATTAGATGATGCATCTACTTCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACTGTCTCTAACATTTTTCCAAGATAA 1968 0.4019 MFFLGFKLLVTEAQSPNYVGDDCSSTTPKSLSSEYKDNLKSVLTWLSSDAATSKGYNHNSFGNSTSGADAAVYGLYDCRGDVSGYFCQFCVSTAAREVLQRCPDRVSVITWYDFCILRYSNENFFGNVTVDPSWNHTGSKNVSSSEEIQKGEGFMKSLIRKATVETNQLYYMDGFNLSSTERRYGLVQCSRDLTSEGCRECLETMLAKVPKCCEHKLGWQVSTASCLIKYDDYIFYLPPNQASSVSVPDTQIAKQRGGSKAKLLMIGLSVLGAVALLCFSVYCFWFRKRTRTGRRTGGGIPETIRLSSYHNVQTEETLNPDISTIPLITILQSTDNFSEASKLGEGGFGPVYKGVLPDGRHIAVKRLSESSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEEKEKILVYEYMTNASLDFHLFDERKKRQLDWQLRLSIINGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARSFEKGQNQANTRRVMGTYGYMAPEYAMEGLFSVKSDVFSYGVLVLEIICGKKNSGFYLSECGQSLTLYAWKVWCEGKCLELMDPVLEESFVESEFVKCMHIGLLCVQEDAADRPTMSTVVVMLASDMMSLPKPNQPAFSVGRMTLDDASTSKSSKNLSINDVTVSNIFPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00190 655 Gene3D - 133 235 IPR038408 -
Vian5g00190 655 Gene3D - 17 124 IPR038408 -
Vian5g00190 655 SMART serkin_6 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00190 655 Pfam Salt stress response/antifungal 154 233 IPR002902 -
Vian5g00190 655 Pfam Salt stress response/antifungal 23 121 IPR002902 -
Vian5g00190 655 ProSiteProfiles Gnk2-homologous domain profile. 17 124 IPR002902 -
Vian5g00190 655 Gene3D Transferase(Phosphotransferase) domain 1 413 618 - -
Vian5g00190 655 Gene3D Phosphorylase Kinase; domain 1 301 412 - -
Vian5g00190 655 ProSiteProfiles Gnk2-homologous domain profile. 130 235 IPR002902 -
Vian5g00190 655 FunFam Cysteine-rich receptor-like protein kinase 10 302 412 - -
Vian5g00190 655 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00190 655 FunFam Liguleless narrow1 413 616 - -
Vian5g00190 655 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672|GO:0006468
Vian5g00190 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 651 - -
Vian5g00190 655 FunFam Cysteine-rich receptor-like protein kinase 28 19 123 - -
Vian5g00190 655 Pfam Domain of unknown function (DUF3403) 610 655 IPR021820 GO:0004674
Vian5g00190 655 SUPERFAMILY Protein kinase-like (PK-like) 324 639 IPR011009 -
Vian5g00190 655 FunFam Cysteine-rich receptor-like protein kinase 10 133 235 - -
Vian5g00190 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vian5g00190 655 CDD STKc_IRAK 343 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00190 Vian-Chr5 3787416 3790470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00190 6 655 Receptor kinase-like Gene Family AT4G05200 42.136 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00190 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00190 - - gmx:100796972 1091.64