Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00185 ATGGCGCGCGACGTCCAGGCGGCGACGACGAAGGCAGCGGCGGCGAAGGCTGGGCACATGGAGTCATCCTCCCTCTCGTCCTTGGTGTCGGCAATGGACCTTTTATCCTTTCTGCGGTCATTACTTTCTCTTGACCGCACAGTAATTTTATGGAGTCTTGGAGCAGCCATTATCTACAACAAGGACCATGCATGGGATGACCAATGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCTATTGCTGCTTTGTATCACCATATAGTTATCCGAGCCATTCCTTTCAAGGCAAGAGCTTAA 300 0.51 MARDVQAATTKAAAAKAGHMESSSLSSLVSAMDLLSFLRSLLSLDRTVILWSLGAAIIYNKDHAWDDQWIFWVGPFIGAAIAALYHHIVIRAIPFKARA 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00185 99 Pfam Major intrinsic protein 7 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g00185 99 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 52 94 IPR034294 -
Vian5g00185 99 Gene3D Glycerol uptake facilitator protein. 7 97 IPR023271 -
Vian5g00185 99 SUPERFAMILY Aquaporin-like 52 90 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00185 Vian-Chr5 3704870 3705352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00185 52 99 Major Intrinsic Protein MIP AT1G01620 87.500 7.04e-27 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00185 K09872 - var:108321521 144.821