Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00175 ATGCAAAGAGCAAGCAACAGTCGACCTTTAATCCTCTCAGAAGGCAAGATCGAGTCTGCTGCCGCGGTCCTCCTGCACTCCCTCGCCTACCTCCCGCGTGCCGCCCAGCGCCGCCTCCATTCCTACCACCTCATCCTCTGCCTCGGCTCTGGCGACCACGCCGTCGACTCCGCCCTTTCCGCTGACCTCGGCCTTCGCCTCGTCCACGTCGACACCTCGCGTGCCGAGGAGATCGCAGACACCGTCATGGCACTCTTCCTCGGCCTCCTCCACCGCACGCACCTCGTCTCCCACCGCACGGACCTCGTCTCCCGCCACGTGCTCTCCGCCTCCAGCTGGCTCGGCTCCGTCCAGCCTCTCTGCCGTGGGATGCGCCGCTGTCGCGGCCTTGTTCTCAGCATCGTCGGAATCTCTGGCTTGGCTAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTGGTAAAGTTTAAGGTTCGGTGCTCCAAGTACCTGTACACCCTCTGTGTGTTTGACTCTGAGAAGGCTGATAAGTTGAAGCAATCACTTCCTCCAGTGTTGATTTTACATGTATATGGGTCTTTGGGTACTGTCTTGAAGATAAAATCTGCTTTTGCCGTAGATCATATGAAAGGTTTTGTATACATTGAGGCTGAAAGGCAGTGTGATATAAATGAGGCATGTCAAGGGATTCCCGGAATCTATGTTACTCGAGTAGCTCTAGTACCAAATAGTGAGGTCTATCATCTTTTTTCTGTTAGAAATAGAACCCCTGAAATTTCTGAGGGTATGTGGGCTCGAATAAAAGGTGGTAATTACAAAGGGGATTTAGCACAGGTGGTGGCTGTAAATAATACCAGGAAAAAGGTTACAGTTAAGCTCATTCCAAGAATTGATCTGCAAGCTTTGGCTGCCAAATTTGTAAGGAGACCTGTGTCCACTTGA 951 0.5216 MQRASNSRPLILSEGKIESAAAVLLHSLAYLPRAAQRRLHSYHLILCLGSGDHAVDSALSADLGLRLVHVDTSRAEEIADTVMALFLGLLHRTHLVSHRTDLVSRHVLSASSWLGSVQPLCRGMRRCRGLVLSIVGISGLARKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVLILHVYGSLGTVLKIKSAFAVDHMKGFVYIEAERQCDINEACQGIPGIYVTRVALVPNSEVYHLFSVRNRTPEISEGMWARIKGGNYKGDLAQVVAVNNTRKKVTVKLIPRIDLQALAAKFVRRPVST 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00175 316 Pfam Early transcription elongation factor of RNA pol II, NGN section 201 253 IPR005100 -
Vian5g00175 316 Gene3D - 137 190 IPR038464 -
Vian5g00175 316 CDD KOW_Spt5_1 265 302 IPR041973 -
Vian5g00175 316 CDD NGN_Euk 201 254 IPR039385 -
Vian5g00175 316 Gene3D - 264 311 IPR014722 -
Vian5g00175 316 Pfam Ribosomal L38e protein family 141 189 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vian5g00175 316 FunFam 60S ribosomal protein L38 137 193 - -
Vian5g00175 316 PANTHER C-TERMINAL BINDING PROTEIN AN-RELATED 12 145 IPR045015 GO:0000226
Vian5g00175 316 Gene3D - 191 263 IPR036735 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00175 Vian-Chr5 3512490 3514168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00175 142 189 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 91.667 2.18e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00175 - - var:108325348 328.176