Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00158 ATGAGTCCTCCAGCTGAATCCAACAGGATGGAAGATGGCACGCCAGAAAACACCACAGACCAAGTTGTGTCTCGCTTCGTCGAGTTCCTCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGCAAAGAAGCAATCAATTTGCTTGGAGAAACCAAACATATTCTTCTCACAAATATTTCATCAATGGGGAATGGAACGTCTGAAGAAGCTGAGCGGTATTGGTTTGCTTTTATTTCGTACTCTGTCAAGAAATTGATCCACAAAAATGAGGAGGCTGGAAAGGAAGAGAATGTGAATTCCAGGCTTAGCTTGTGTCAGATATTGAGAGCAGCTAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTCAAGGCTGGTCCAACTTTAAGTAACATATATGGAACAGATTGGGAAAACAGGCTGGAGGCGAAGGAGACACATGCCAATGCTATTCACTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAACTCATCTGTTATTGTTCATGCATCTGAATACCATCGATTTGGTTGGTTGCTTTTCTTAGCTCTTCGTGTACATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCATCACGCTTTGTTAAGAAAAATAACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCAGAATGCGAAACTGAAAACCTAGAAAATGTTGATAAAGATTGTTTGACCTATTTTAAAGATTTAATGGAAGAATCGTCTCTACCTTCAAGTTTAAACTTATTAGAAAAGGACTATGAGTACATGATTCGCCACAAGAGTGAACTGGATGAGAGGTTATTCATTAACGAGGATGACAGCCTATTAGCTTCTGGAAGTTTGTCTGGAGGTTCTGCTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTTCTAAGACCATTACAAGTCCACTCTCACCTCATCGCTCTCCATCGTCACATGCCAATGGCATCCCTGGTAGCGCAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCAAAGCCCTCGCAAGAGCTGGAAAGATTTCTGACATCATGTGATAGGGATGTTACAAGCGATGTAGTGTGCAGAGCACAGATTATATTGCAGGCTACTTTTCCTAGTAGTCCACTTGGAGAATTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTCTTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACGAATGAGAGGTTCCATCGGTGTATGCTTGCATGCTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACGGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATTAACCGCCTGGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGGCTGCCACCAGTGCCTACCTTGCCCAAGCTTGAAAGTTCACCAATTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTGATGGAAAGAAATTCGTTCACTTCTCCTGTGAAAGATCGGCTTCTTCCCTTCAGCAATCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCTGCGTTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACATGTGCAGAAACTGGTATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTTGAAAGACTGCAATTATCTCAACAAATAAGGGAGAATGTATACTGCCTTTTCAAGCGGATCCTACATCAAAGGACATCTCTCTTCTTCAACCATCATATTGACCAAATAATCTTGTGTTGTTTCTATGGAGTTGCGAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAAACAACCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGTACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATCACCTTTTACAATGAAATATTTATTCCCTCAGTAAAGCCTCTATTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAAAGTGACCGAATGCCTGAATTTGATAATAAAAGTGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAGTATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCCGCTACACACAATGTATATGTCTCTCCGTTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCTTGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTAA 3045 0.4171 MSPPAESNRMEDGTPENTTDQVVSRFVEFLKNELALEEKSCKEAINLLGETKHILLTNISSMGNGTSEEAERYWFAFISYSVKKLIHKNEEAGKEENVNSRLSLCQILRAAKLNIADFFKELPQFVVKAGPTLSNIYGTDWENRLEAKETHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSSVIVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENVDKDCLTYFKDLMEESSLPSSLNLLEKDYEYMIRHKSELDERLFINEDDSLLASGSLSGGSASAGGVKRKFDSLASPSKTITSPLSPHRSPSSHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLAPKPSQELERFLTSCDRDVTSDVVCRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPIQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFKRILHQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLVRRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRMPEFDNKSDGHLAQCPGSPKVSSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00158 1014 MobiDBLite consensus disorder prediction 382 410 - -
Vian5g00158 1014 Pfam Domain of unknown function (DUF3452) 99 231 IPR024599 -
Vian5g00158 1014 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Vian5g00158 1014 FunFam Retinoblastoma-related protein 1 416 604 - -
Vian5g00158 1014 FunFam Retinoblastoma-related protein 1 192 350 - -
Vian5g00158 1014 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Vian5g00158 1014 Gene3D - 696 881 - -
Vian5g00158 1014 Pfam Retinoblastoma-associated protein B domain 732 859 IPR002719 GO:0005634|GO:0051726
Vian5g00158 1014 FunFam Retinoblastoma-related protein 1 682 895 - -
Vian5g00158 1014 Coils Coil 27 47 - -
Vian5g00158 1014 SUPERFAMILY Cyclin-like 730 869 IPR036915 -
Vian5g00158 1014 Coils Coil 269 289 - -
Vian5g00158 1014 Gene3D - 192 350 - -
Vian5g00158 1014 SMART DUF3452_2 83 231 IPR024599 -
Vian5g00158 1014 Gene3D - 416 604 - -
Vian5g00158 1014 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Vian5g00158 1014 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1012 IPR028309 GO:0006357|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00158 26 1014 Core Cell Cycle Gene Families AT3G12280 69.811 0.0 1387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vian5g00158 RB_A 3.4e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00158 K04681 - gmx:100779266 1813.12