Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00143 ATGGCGGAAAGGGAGGGCGTGGGGTTGACGACGAGGATTCCAATGTCCTTGGGTTTGACGCGGGTGTTGGCGAAGAGGTTGTCAAGGGCGCCGAACATGACCTGCTCGACCTCTTCCCTGGCGGTAGGTTTCCTTGTCGAGGCCAGAGCGGAGGAGAATCTTGCGTTGGAAATCGAGGGAGGATGGGAGGAAATCGCCGGTAAGGGTAGAGTGGTGGATGAACTTTTGGAAGTGGACGATGAGGTGATTTGGGGGACGGCAGCAAGAGAAGTCGAGGAGCTGATTGAGAGAGGCAATGCGTTCATAGTCGAAAGAATCTCAACCAGATTTGGGAAAGTTGATCGTGGAGAAGTTGTAAGCTTACGCAACCCTAATAAAGGGATCATCAAACGTTTGATTGGATTGGAGGGTGATAGGCTTAGACACTGTTCCAATGCTGACACCAATATATTGGTGGGTGATTCTTTTGCACAGAACAACGATGAACCTGAAACCATTGTGGTTCCAAAGGGTGCTGTTTGGGTGGAAGGAGATAACAAGAATCGAAGTCTAGATTCAAGAAAGTATGGTCCTATTTCTTATGGCCTTATAAGGGCAGGCTATTCTGGAGGCATGACTCTGCTAAATTTTGAAAGGCAAAACCTTACTTATTTGGACCCGGTAGTTTATTCCCTAGTTTGGTGCATTTTGCTCACCAAATATTCAAAGGCTTGGTCCATTGTTTTATGGAACACTTTCTTAATCCTGCTGAAACTTTGGTCTGAGGATATCTTCATGAAGGCCATCTCTGTGCTGATATGA 801 0.4694 MAEREGVGLTTRIPMSLGLTRVLAKRLSRAPNMTCSTSSLAVGFLVEARAEENLALEIEGGWEEIAGKGRVVDELLEVDDEVIWGTAAREVEELIERGNAFIVERISTRFGKVDRGEVVSLRNPNKGIIKRLIGLEGDRLRHCSNADTNILVGDSFAQNNDEPETIVVPKGAVWVEGDNKNRSLDSRKYGPISYGLIRAGYSGGMTLLNFERQNLTYLDPVVYSLVWCILLTKYSKAWSIVLWNTFLILLKLWSEDIFMKAISVLI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00143 266 NCBIfam signal peptidase I 92 198 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00143 266 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 95 199 - -
Vian5g00143 266 PRINTS Bacterial leader peptidase 1 (S26A) family signature 128 140 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00143 266 PRINTS Bacterial leader peptidase 1 (S26A) family signature 168 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00143 266 CDD S26_SPase_I 95 197 IPR019533 GO:0004252|GO:0006465
Vian5g00143 266 Pfam Signal peptidase, peptidase S26 95 193 IPR019533 GO:0004252|GO:0006465
Vian5g00143 266 SUPERFAMILY LexA/Signal peptidase 95 198 IPR036286 -
Vian5g00143 266 Gene3D Umud Fragment, subunit A 89 202 - -
Vian5g00143 266 ProSitePatterns Signal peptidases I signature 3. 173 186 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00143 Vian-Chr5 2662174 2664135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00143 94 199 MADS-box Gene Family AT1G29960 46.789 3.37e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00143 K09647 - var:108339067 358.221