Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00138 ATGACATTGGGGACTATTTTTAAGAGCTTGTGTTATATACATGTTGTCAAGACCTATGTGATCGACCCTCTTGGGACCTTTGGTCCTAGCATGCTTCCTACAATCGATTCGACAGCAAGTATCTTCTTGACTGAAAAGATCTCAACCCGATTTGGTAAAGTTGATCGTGAAGATATTATAGTCTTTTGCGACCCTCAAAAACCTGGGCGTTATCTGACCAAACGCGTGATTGGGTTGGAGGGTGATAGGATTACGTACAGTTCCAATCCTGAGACCAATGACTTGGTGGATGATAATTTTACACACATTTCCTATCCCGAGAACAATGATAAGCCTCAGACGGTTGTGGTTCCAAAGGGTAGCATTTGGGTAGAGGGAGATAACAAGTCTAATAGCCGTGATTCTAGAAAATTTGGTCCTGTTCCTTATGGCCTTATTGACAGCAAGATATTCTGGAGGATATATCCATTTCAATATTTTGGACCTTTCTGGAATAAATGA 501 0.4112 MTLGTIFKSLCYIHVVKTYVIDPLGTFGPSMLPTIDSTASIFLTEKISTRFGKVDREDIIVFCDPQKPGRYLTKRVIGLEGDRITYSSNPETNDLVDDNFTHISYPENNDKPQTVVVPKGSIWVEGDNKSNSRDSRKFGPVPYGLIDSKIFWRIYPFQYFGPFWNK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00138 166 Gene3D Umud Fragment, subunit A 15 165 - -
Vian5g00138 166 NCBIfam signal peptidase I 4 158 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00138 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 163 - -
Vian5g00138 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 84 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00138 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 19 35 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00138 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian5g00138 166 CDD S26_SPase_I 28 146 IPR019533 GO:0004252|GO:0006465
Vian5g00138 166 Pfam Signal peptidase, peptidase S26 5 150 IPR019533 GO:0004252|GO:0006465
Vian5g00138 166 ProSitePatterns Signal peptidases I signature 3. 122 135 IPR019758 GO:0004252|GO:0016020
Vian5g00138 166 SUPERFAMILY LexA/Signal peptidase 18 164 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00138 Vian-Chr5 2610084 2611261 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00138 31 163 MADS-box Gene Family AT1G29960 43.609 1.60e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00138 K09647 - gmx:100526949 226.868