Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00094 ATGGCACCTATGGGTCCCGCGCAAGATCACCGGAAAGCTCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAGCGATTCATCTCTCTTGAATCCAATCCATGGCACCTATGGGTCCCGGCTTCCGATTCCACCGGTTCTACCTGAACCTGAAGCGCAAGATCACCGAAAACCTGTCCCGATACGACACATCGCAGTGGTTGATGTCTACAAGCTCGAGTCTTGGGACCTTCCTCCTCTGTCGAAGCTGAAGACAAAGGACTTGGAATGGTACTTCTTCAGCGTGATGGACCACAAGTATGGAAATGGATCCATGACCAACCGCGCCACCGAGAAGGGCTACTGGAAAGGACCGCCTTGTGGCCCATGGCAACCGCACCACGGGGATGAAGAAGACCCTCGTGTACCACACCCATGTTCTTTCTATCACCGATTCCCACCTCTGCCAAGTTCAACTACCATCGATTCCCACCTATCCTCGGGTACCCCTTATAGGCCTAAGATGGTTCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTATGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTACCAACAACAAGGGCAAACACACCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTTCTGTTGGTGATTATGCCATCACTGACTATAATCCTGGTGTTATTACTGCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAAATGCAGTTCCACAACCTATTCCAGCTCCCCTTGCTCTGCTGGACCGTGGCATTCTTGGACGTGCAGCCTGCTGGATCACTTCTTGTGGACGTGCAATTCTCCAACGACGTTCCCCTCTTCTAATTGATGCACCCCCTTCCATTCAATCCCCTTCAGCCCGTGAAGTGCTTCCAAGTGTTGCTGGACGCTGGAAACGTGAAGGTTGTACGTAG 1071 0.507 MAPMGPAQDHRKALIPNFLSLFFSLSDSSLLNPIHGTYGSRLPIPPVLPEPEAQDHRKPVPIRHIAVVDVYKLESWDLPPLSKLKTKDLEWYFFSVMDHKYGNGSMTNRATEKGYWKGPPCGPWQPHHGDEEDPRVPHPCSFYHRFPPLPSSTTIDSHLSSGTPYRPKMVPIKEGALGNIPTIAFYDTDSPMRYVDIGIPTNNKGKHTIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEASVGDYAITDYNPGVITADGQWPGTIDQSWTNAVPQPIPAPLALLDRGILGRAACWITSCGRAILQRRSPLLIDAPPSIQSPSAREVLPSVAGRWKREGCT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00094 356 SUPERFAMILY Ribosomal protein S2 99 238 IPR023591 -
Vian5g00094 356 Gene3D - 154 258 - -
Vian5g00094 356 ProSiteProfiles NAC domain profile. 31 183 IPR003441 GO:0003677|GO:0006355
Vian5g00094 356 PANTHER 40S RIBOSOMAL PROTEIN SA 171 295 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vian5g00094 356 Gene3D NAC domain 51 121 IPR036093 GO:0003677|GO:0006355
Vian5g00094 356 Pfam No apical meristem (NAM) protein 57 118 IPR003441 GO:0003677|GO:0006355
Vian5g00094 356 SUPERFAMILY NAC domain 57 117 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00094 Vian-Chr5 1651735 1653952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00094 166 299 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 65.693 3.17e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00094 K02998 - var:108339086 324.324