Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00093 ATGGTGAAGGACACAGCGTACTATGACATATTAGGTGTGAACGTTGATGCATCTGCTGCAGATATCAAGAAGGCTTATTATGTCAAGGCAAGAATTGTTCACCCTGATAAGAATCCAGGGGATCCTCAGGCCGCAGAAAATTTTCAGAAACTTGGTGAGGCTTACCAGGTTTTAAGTGACCCCGTGAAGCGTGAAGCATATGATAAAAATGGAAAAGAGGGAGTAGTACAAGATAACATGATGGACCCTACCGCTGTATTTGGAATGATTTTCGGAAGTGAAGTTTTTGAAGAATATATTGGGAAACTTGCACTGGCTTCTTTAGCATCTATAGAAATTGATGAAGACATACAGGACCCTGAAGCTCAGAGGCAAAAAATTCAAGAAAAGATGAAAGCATGGCAGAAGGAAAGAGAGCAGAAGCTTTCAGCAATTCTGATAGACCGGCTGCAACTATCGGTTGTTGGTCAAGAAGAGGAATTTACTGCATGGGCAAAGTCAGAAGCTCGTACCCTTTCTAAAGCCGCTTTTGGTGAGGCCATGCTACATACAATTGGTTACATCTACACACGAAAATCTGCAAGAGAACTTGGCAAGGATTTACGGTACATGAATGTTCCCTTTTTGGCTGAGTGGGTTCGAGATAAAGGACACCGTATTAAGTCACAAGTAACAGCAGCCTCAGGAGCTGTGTCCCTAATTCAAATACAAGAAGAGCTCAAGAAACTAAACCAAGGAGAAAACAAGGAAGAAAACATAATCAAAGCTATTGAAGATAAGAAGGATGCCATGGTTAATTCTCTATGGCAGATCAATGTGATTGATATTGAATCAACTCTGTCACATGTTTGCCAAGCAGTTCTTAAAGATCCTAGTGCCTCCAAAGATGTTCTGAAGGCTCGGGCCAAAGCATTGAAAAAGTTAGGAAGCATCTTTCAAGAAACAAGCGGAATGCTGAAGGGGTAG 966 0.4161 MVKDTAYYDILGVNVDASAADIKKAYYVKARIVHPDKNPGDPQAAENFQKLGEAYQVLSDPVKREAYDKNGKEGVVQDNMMDPTAVFGMIFGSEVFEEYIGKLALASLASIEIDEDIQDPEAQRQKIQEKMKAWQKEREQKLSAILIDRLQLSVVGQEEEFTAWAKSEARTLSKAAFGEAMLHTIGYIYTRKSARELGKDLRYMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEENIIKAIEDKKDAMVNSLWQINVIDIESTLSHVCQAVLKDPSASKDVLKARAKALKKLGSIFQETSGMLKG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00093 321 Gene3D DnaJ domain 1 87 IPR036869 -
Vian5g00093 321 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vian5g00093 321 Pfam X-domain of DnaJ-containing 135 316 IPR026894 -
Vian5g00093 321 CDD DnaJ 7 60 IPR001623 -
Vian5g00093 321 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 314 - -
Vian5g00093 321 Pfam DnaJ domain 7 68 IPR001623 -
Vian5g00093 321 Coils Coil 240 260 - -
Vian5g00093 321 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vian5g00093 321 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vian5g00093 321 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vian5g00093 321 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vian5g00093 321 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Vian5g00093 321 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vian5g00093 321 SMART dnaj_3 5 63 IPR001623 -
Vian5g00093 321 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00093 Vian-Chr5 1607290 1614244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00093 7 68 Miscellaneous Gene Families AT1G16680 53.125 1.71e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00093 - - gmx:100787075 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00093 5 1607290 1614244 Vian5g00093 5 1607290 1614244 ECH