Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00083 ATGGAGTCCTCTGTTGACGTGTTGTCAGCTAAGCGCTGTCGTTCAACCGGATCTTCCTCTGGCCCTGACATAGGCAAAAGACAGAAGTTATCAGATGTCTCTGACCATACGAATCCATCTGCAATTTCGGATATTGTGGTTCATATAGAGCATGGGAAATATGGAAGTGTCACAAAGGAGATAGAGGACCTTGTAGCCATAAAAATGCAGATACTTGGACCTTACTTTGCAAAGTATCCCGAACTTGTTAATCAATTCATGAATGTGGTAACTGACCACGATGAAGACACTACTAAATTCGAAGATCAACACGACACTGGTTTGACATATCATAATGTCATAGATTTGGCGAGGGAAAACATTGAGAAGAATGTTCATGCAGCTCCAGTTGCTGTTATTCACATTGATTCAGATGTGGAAGATGATGGAGATAAAAAAGCTATTGTTCCTTTTCATGAAGCTTCAGAAGTGGAAGATGATATACACAATAAATTTATTGTTCCATTTCATGAAGCTTCAGAAGAAGAAGATTATAGACAAAATAAATCAATTGTTCAGTTTGAAATTGTGTTGCCGCTAGTTGCACCGTCTCCTGTTGTGATGAAGACAGTTAGGCAGCGTACTCCCATTCCTAACCGTCGCAAAAGTAAAGATCCGAAAATTGAGACAAGTATAGCGGGTAAAGGTGTTCATATCGGTGTAAAGGAGGAAGAGGATCATCAGGTCAACCCCGAAGATAATGACGGCTTAGAAGATATTTGGAAGGAGATGTCGATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGAATCCTCTGCCAGATGAAGTAGAAAGAGGCCATGAAGAAGCAGAAAGAGATGAGGAGTGCGATCATTCTTTTATTTTAAAAGATGATCTTGGTTATGTTTGTCGGGTTTGTGGAATTATTGACCGAAAAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCATATGAATCCTGTAACACCAAAGCAAAAGCAGATGTATTTGCAAATAATGTTGCTGAAGATGATCTCATAGTAACTGAATTCTCAGCACATCCTAGACACATGAAACAGATGAAACCTCATCAAATTGACGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGATCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGGTCAGGGAAAACATTCATGGTAATAAGTTTCATGCAAAGTTTTCTAGGCAGGTATCCTAATGCAAGACCATTGGTGGTGCTTCCAAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATACCTCTATACGACTTTTATACAGTGAAGGCAGATAGTAGAAGTCAACAACTGGAAGTGTTGAATCTATGGGTGGAGAAGAAAAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAAGGGGACCAACCATATATCGTCATCATGCCAAAAGATTTTACTCAGGAGTCCTTCAATACTTATTTTAGACGAGGGGCATAATCCTAGGAATGAAAACACAGATATGGTTCAATCCCTTGCAAAAGTTCACACACCTAGAAAAGTTGTTCTGTCGGGAACTCTTTATCAAAATCATGTCAGGGAGGTATTTAACATTCTAGATCTTGTTCGTCCAAAGTTTTTGAAGATGGAAACATCAAAAGCTATCCGCAGGCGCATTTATAGTAGAGTTCATATACCAGGTGTGAGAACCTTCTGTGATATTGTTGAAAACACTTTGAAGGGCACAGACTTTAAAGCAAAAGTAGCCGTCATACAAGATTTACGTGAGATGACAAACAGCGTCCTTCATTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTTCTCAATCTTAACCATACACAAAAGCTTGACATTGAAAAATTAAAAAAGTCATCTGGAAAGTTCAAGATATCTTCTGTAGGAAGCGCCGTGTATTTGCACCCTAAACTGAAATCTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGATATAATTGATGCTCTGATAGAAAAATCAGACGCCAGAGATGGTGTGAAGTCCAAATTCTTTTGGAACATGCTAAATTTGTGTGAATCAGCCGGAGAGAAACTCCTTGTATTTAGTCAATACTTGCTACCTTTGAAATATTTAGAAAGATTAACCATTCAAAGTAAAGGGTGGAGTCTAGGAAAGGAAATATTTGTAATCTCAGGAGAATCGAGCTATGAGCAGCGAGAATGGTCCATGGAAAGATTTAACAATTCTCCTGGTGCCAAAGTCTTCTTTGGCTCCATCAGGGCTTGTGGAGAGGGCATATCATTGGTCGGGGCATCACGCATAGTTATATTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCTGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCTGATTCTCCAGAAGAGGAGGATAACAGCATTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACAAGTATTGTGGTGATCGAGCATTTGAAGTTGAGAAAGTTCTTCTGAAAGAGTGTGGCGATCTTTTTCTTGAGAGTCCATTACTTGGAGAAGATGTAAAAGCTCTGTACAAACGGTAA 2697 0.393 MESSVDVLSAKRCRSTGSSSGPDIGKRQKLSDVSDHTNPSAISDIVVHIEHGKYGSVTKEIEDLVAIKMQILGPYFAKYPELVNQFMNVVTDHDEDTTKFEDQHDTGLTYHNVIDLARENIEKNVHAAPVAVIHIDSDVEDDGDKKAIVPFHEASEVEDDIHNKFIVPFHEASEEEDYRQNKSIVQFEIVLPLVAPSPVVMKTVRQRTPIPNRRKSKDPKIETSIAGKGVHIGVKEEEDHQVNPEDNDGLEDIWKEMSMAMECSKVVSANPLPDEVERGHEEAERDEECDHSFILKDDLGYVCRVCGIIDRKIETIFEFQYKVKRSTRTYAYESCNTKAKADVFANNVAEDDLIVTEFSAHPRHMKQMKPHQIDGFNFLVRNLAGDHPGGCILAHAPGSGKTFMVISFMQSFLGRYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLNLWVEKKSILFLGYKQFSSIVCDKGTNHISSSCQKILLRSPSILILDEGHNPRNENTDMVQSLAKVHTPRKVVLSGTLYQNHVREVFNILDLVRPKFLKMETSKAIRRRIYSRVHIPGVRTFCDIVENTLKGTDFKAKVAVIQDLREMTNSVLHYYKGDFLDELPGLVDFTVVLNLNHTQKLDIEKLKKSSGKFKISSVGSAVYLHPKLKSLAEKCGENNISDDIIDALIEKSDARDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTIQSKGWSLGKEIFVISGESSYEQREWSMERFNNSPGAKVFFGSIRACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNSICFKKELISKMWFEWNKYCGDRAFEVEKVLLKECGDLFLESPLLGEDVKALYKR 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00083 898 SMART helicmild6 734 822 IPR001650 -
Vian5g00083 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 860 IPR027417 -
Vian5g00083 898 CDD SF2_C_SNF 711 833 - -
Vian5g00083 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 382 561 IPR014001 -
Vian5g00083 898 Gene3D - 634 884 IPR027417 -
Vian5g00083 898 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 221 897 IPR044567 GO:0080188
Vian5g00083 898 Pfam Helicase conserved C-terminal domain 716 821 IPR001650 -
Vian5g00083 898 SMART ultradead3 364 574 IPR014001 -
Vian5g00083 898 MobiDBLite consensus disorder prediction 1 36 - -
Vian5g00083 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 874 IPR001650 -
Vian5g00083 898 Gene3D - 333 580 IPR038718 -
Vian5g00083 898 Pfam SNF2-related domain 388 646 IPR000330 GO:0005524|GO:0140658
Vian5g00083 898 MobiDBLite consensus disorder prediction 1 25 - -
Vian5g00083 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 584 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00083 Vian-Chr5 1489435 1495106 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00083 719 850 RAD5 or RAD16-like Gene Family AT5G43530 32.576 1.33e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian5g00083 SNF2_N 1.1e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00083 K10875 - gmx:100795356 1314.29