Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00082 ATGGGAAAGAAGAACAAAATGAAGGAGAATGGAGGCAAAGAGCACTGCCCCTCCACACTTTTTGTCTCCAACTTACCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACATTCAGTGAGATTGGACCTGTGAGGCGTTGCTTTATGGTCACACAGAAAGGGTCAGCTCAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGATGCCAATCGTGCTATTGAGCTGAAGAATGGTATGTCTGTTGAAGGCCGTAAAATTGGAGTGAAGCATGCAATGCCTCGTCCTCCTCGGGAGGAACGAAATTCAAAACCAAATAAAGCTGGAACACCAGATGATCTTGTGAAACCAAAAGGTGATGATGTAAACGACAGCAAATCATCTGGAACAGAGAAGCATGTTTCAGTTTTGAAGGAAGAAGTACAAGTCACAAGTAAACAAAAAAACTCAAAGAACCCAATGGAAACGAAAAAATCAGCTCTTTGTAATGATGTTGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGCCTCAAGGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCCATTAACTACCCTCTTTCAAGGAAAGATCTTGAGAAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCCTCGTCTGTACTTTATACAAGTGTAAAATCAGCTCGACTTTCTGTTGCAATGTTGCACAAAAAAGTGATAAGGGGAGAAACAATTTGGGCCCGCCAATTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTTACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCCAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATACGAATGATACTCGTGCTTCAGAGAAAGAAGAAGAAATCTTGAGTGATGAAGATAGTGATGAGGAGGATGTGGAGCTTGTTGATAAAAGATCTGGCCAAGGAGATGATAATGATACAAACCACTCTAGTGCCATGGTGGAAGAGGGAGCTCCTCCTGAAGATAATTTTGATAAGGAGGCAGACGTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAGAACAATGATTCTATGTTGTCCAAAGAAAACAAAGAATCAAGACCTGATGAAGTTGTTAAGGATGCTGATGGAAAAGTATCTGATGACTTGGAAAAGGTTTCAGGTGCTTCTAAGCCTGACATTTCCAGCATAAACAAGTTATCTAATCCTAAGGGAACAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTTCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAGCTGCTATTGCTGCTTCCGGGACAGGTATTTTGCTGAAGGGTAGACCGTTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTAATGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCCAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTTGGTGCTGAACATCGACCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTGCAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGACATGGAAAATGACAAACCTGGCAAGAAAAAAGATCACAGAGAGGACAGAAAACGAAAGTCTAGAGAGCATGGTGAACCGGCAAAGGAAGCAGTAGTGAATTCAAATGGTGAATCAGGTGATACACTGGCAAATGGAAAATCCAAAAGACAGAAAGGCAACAAAAAGAGCAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATATTCAAAATGGCCAGAAAATTGGTGGTGCATCTGTTGAAGATCAAAACACTGCTGCTTCCACTAACAGAAGAAAATCAGGAAACAAAGATGATGATACTGGGTTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGGCATAAGGTGGTTTCTAAGAAACGACCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTAATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGGAGAGAAAAAGCCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2859 0.4082 MGKKNKMKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGMSVEGRKIGVKHAMPRPPREERNSKPNKAGTPDDLVKPKGDDVNDSKSSGTEKHVSVLKEEVQVTSKQKNSKNPMETKKSALCNDVADDGGCSEKQRVARTVIFGGLKDSDMAEEVHSQAREIGTVCSINYPLSRKDLEKHGLMQDGCTMDASSVLYTSVKSARLSVAMLHKKVIRGETIWARQLGGEGSKTQKWKLIVRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDTNDTRASEKEEEILSDEDSDEEDVELVDKRSGQGDDNDTNHSSAMVEEGAPPEDNFDKEADVARKVLNNLLGSSSKGTSENNDSMLSKENKESRPDEVVKDADGKVSDDLEKVSGASKPDISSINKLSNPKGTEEDLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISAAIAASGTGILLKGRPLKVLKALDKKSAHDKELEKAKNEVNDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGAEHRPIVEFALDNVQTLKLRKAKLQFQQQAPQDDNNDMENDKPGKKKDHREDRKRKSREHGEPAKEAVVNSNGESGDTLANGKSKRQKGNKKSKRALKENPEALSMKPKNIQNGQKIGGASVEDQNTAASTNRRKSGNKDDDTGFRKRKMQNQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENGEKKPSKQLRKWFQS 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00082 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 765 IPR000504 GO:0003723
Vian5g00082 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Vian5g00082 952 Gene3D - 2 110 IPR012677 -
Vian5g00082 952 MobiDBLite consensus disorder prediction 904 946 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 870 897 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 87 158 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 361 417 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 90 141 - -
Vian5g00082 952 CDD RRM1_RBM28_like 19 97 - -
Vian5g00082 952 SUPERFAMILY RNA-binding domain, RBD 18 263 IPR035979 GO:0003676
Vian5g00082 952 Gene3D - 488 591 IPR012677 -
Vian5g00082 952 SUPERFAMILY RNA-binding domain, RBD 272 357 IPR035979 GO:0003676
Vian5g00082 952 Coils Coil 578 605 - -
Vian5g00082 952 CDD RRM4_RBM28_like 652 749 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 479 496 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 761 952 - -
Vian5g00082 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Vian5g00082 952 MobiDBLite consensus disorder prediction 771 801 - -
Vian5g00082 952 Gene3D - 265 400 IPR012677 -
Vian5g00082 952 MobiDBLite consensus disorder prediction 142 158 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 842 869 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 430 445 - -
Vian5g00082 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 583 IPR000504 GO:0003723
Vian5g00082 952 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 952 - -
Vian5g00082 952 SMART rrm1_1 501 579 IPR000504 GO:0003723
Vian5g00082 952 SMART rrm1_1 653 744 IPR000504 GO:0003723
Vian5g00082 952 SMART rrm1_1 19 92 IPR000504 GO:0003723
Vian5g00082 952 SMART rrm1_1 277 350 IPR000504 GO:0003723
Vian5g00082 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 560 IPR000504 GO:0003723
Vian5g00082 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Vian5g00082 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Vian5g00082 952 MobiDBLite consensus disorder prediction 446 476 - -
Vian5g00082 952 MobiDBLite consensus disorder prediction 430 496 - -
Vian5g00082 952 FunFam RNA-binding motif protein 28 651 746 - -
Vian5g00082 952 SUPERFAMILY RNA-binding domain, RBD 500 730 IPR035979 GO:0003676
Vian5g00082 952 FunFam - 2 130 - -
Vian5g00082 952 CDD RRM2_RBM28_like 277 353 - -
Vian5g00082 952 Gene3D - 651 746 IPR012677 -
Vian5g00082 952 FunFam Putative RNA binding ribonucleoprotein 429 597 - -
Vian5g00082 952 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 267 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00082 Vian-Chr5 1478141 1485987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00082 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 6.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00082 K14573 - gmx:100794821 1512.28