LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00081	ATGAGTAATGTTCAAGAAAATGATACACTGAACACTCTTTATGAGGTTTCATTGAGAGGTAGTGTTTCTGAGTTAGAAACTCTGATTGGAAGAGACCCTCTTATCCTTCACAGAATTTCCTTAACAGCATTCACTGAAACTCCTTTGCACATATCAGCTTTACTTGGTCATCTTGATTTCACAAAGTCCCTTCTGACTCACAGACCTCAACTTGCTCTTGAGACTGACCACTGCAAACGCACCCCTCTTCATCTGGCTTCTGCTGAAGGCCATGTAGAGATTGTTCATGTTTTGCTGCAGACATGTGAAGATGCATGCTTGATGAGTGACCAAGATGGAAGGATTCCTCTTCATTATGCAGCTATGAGAGGAAGAACGGAGGTTGCAAGACAGTTGATCAGTGGAGCAAAGTCAGAATCTGTGATGGTGTTTGATGGATCAGGAAAAACTATGTTTCACCTTTGTGTTGAGCACAATCACTTGGAGACTTTGAAAACACTGGTGGAAGTTGGAAATGTCACGGAGGATTTTCTAAACTGTGGAGACTTTCATCATGGAAATACCATTCTCCATTTGGCTGTTATGTTCAAGCAACTTGAGAGTGTAAGGTACTTGCTCTCAATATCCAAAATAAAAGAAGAAGCAAATATTGAGAACAAGATGGGTTACACTGCTTTGGACATGCTAGAGCATGTTCCAAAAGACATGAGAAGTCTTCAAATAAAACTCATGCTGATGGATGCTGGATTCAAGAACAATGAAAATAACCAAGTTCATCATCCACCATCTGCATCAATCATAGATGTTCCTCCATCAAGGACAATAAATCCAAATGAAAAGTTTTGGAGTTTGAAGCGTGTGAACAAGGTCTTAAACCTTAAAAGTGGTAGGTTGGAAGAAATGAGAGGCATGTTGAGTTTGGTGTCTACAATGATCTCAACCGTGACCTTTGGTGTTGTGATCAATCCACCAGGTGGTGATGATCATTGGTTATCTGTAGAAGATAGAAAAATGTTCATAAGTTTGTTAACTATGAACACAATCTCTTTCATTGCATCACTCGGTGTCACTCTTTTACTTATAAGTGGAGTTCCCTTAAAGAATGAAGTCACAATGGGGCTCTTATCAGTAGGCACATGTGTCTGTCTCACATTTCTTGTGCTTACTTACATAAATGCTGTGCAATTGAACAAAAATTTGCATTTTGGGGACACATTTTCTGTGATGTTTTCTTGGTTTGTACTTGTTGGGACAATAGTTGTGTTTACCATAATTCGTGTAATTTCTAAGCTAGCGAAAGTTCTGTAG	1308	0.3922	MSNVQENDTLNTLYEVSLRGSVSELETLIGRDPLILHRISLTAFTETPLHISALLGHLDFTKSLLTHRPQLALETDHCKRTPLHLASAEGHVEIVHVLLQTCEDACLMSDQDGRIPLHYAAMRGRTEVARQLISGAKSESVMVFDGSGKTMFHLCVEHNHLETLKTLVEVGNVTEDFLNCGDFHHGNTILHLAVMFKQLESVRYLLSISKIKEEANIENKMGYTALDMLEHVPKDMRSLQIKLMLMDAGFKNNENNQVHHPPSASIIDVPPSRTINPNEKFWSLKRVNKVLNLKSGRLEEMRGMLSLVSTMISTVTFGVVINPPGGDDHWLSVEDRKMFISLLTMNTISFIASLGVTLLLISGVPLKNEVTMGLLSVGTCVCLTFLVLTYINAVQLNKNLHFGDTFSVMFSWFVLVGTIVVFTIIRVISKLAKVL	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00081	435	PANTHER	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	10	431	-	-
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat profile.	112	134	IPR002110	GO:0005515
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat region circular profile.	112	134	-	-
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat profile.	78	110	IPR002110	GO:0005515
	Vian5g00081	435	SMART	ANK_2a	78	107	IPR002110	GO:0005515
	Vian5g00081	435	SMART	ANK_2a	147	175	IPR002110	GO:0005515
	Vian5g00081	435	SMART	ANK_2a	112	143	IPR002110	GO:0005515
	Vian5g00081	435	SMART	ANK_2a	44	73	IPR002110	GO:0005515
	Vian5g00081	435	SMART	ANK_2a	185	214	IPR002110	GO:0005515
	Vian5g00081	435	SUPERFAMILY	Ankyrin repeat	13	229	IPR036770	-
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat region circular profile.	185	207	-	-
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat profile.	185	207	IPR002110	GO:0005515
	Vian5g00081	435	Pfam	Ankyrin repeats (3 copies)	37	100	IPR002110	GO:0005515
	Vian5g00081	435	Pfam	Ankyrin repeats (3 copies)	112	171	IPR002110	GO:0005515
	Vian5g00081	435	Gene3D	-	19	138	IPR036770	-
	Vian5g00081	435	Pfam	Domain of unknown function	297	393	IPR026961	-
	Vian5g00081	435	ProSiteProfiles	Ankyrin repeat region circular profile.	78	100	-	-
	Vian5g00081	435	Gene3D	-	139	233	IPR036770	-
	Vian5g00081	435	Pfam	Ankyrin repeat	185	206	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00081	Vian-Chr5	1472399	1474481	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00081	20	326	Miscellaneous Gene Families	AT4G10720	27.215	5.33e-27	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00081	-		-	gmx:100796407	482.256