Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00071 ATGAAAACGCTAACTGTTAACACCGAAGATTCTTTTTCCAGTCTGCTAGAGCTTGCCTCTAACAATGATATTGAAGGTTTTAAGGTTCTTTTAGAGAAGGATCCTTCTGCGATCAACGAGGTTGGATTCTGGTATGGACGTCAAAACGGATCAAAGCAAATTGTTCTTGAGCACCGTACTCCTTTGATGGTCGCTGCTACTTACGGTAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCTGATGTGAATTTCGCATGTGGGGCGAATAAAACCACTGCCCTTCACTGTGCTGCTTCTGGTGGTTCTGCCAATGCTGTTGAAACTGTGAAGCTGCTTTTATCCGCAGGTGCTGATGCGAGTTGCATGGATGCCTATGGAAATCGCCCAGTAGATGTGATTGTTGTCCCTCCTAAGCTGCAAGAAATGAAACCTGTGCTTGAGGAGCTATTATCCGACAGTGCTTCGGACGGGTCTATTGGTGGGTCCATTGGTGAATTATCTGTTCCTGTGTCTGTCAATTCATCAAGCCCTGGTTCACCGAATGGTTTGCCATACTCTCCGTCAGCCTCGCCACCATCTCCGGTGGTGGCAAAGTTTACTGAAGCAGCTATTGGGTCTTTGTCAGAGAAGAAGGAGTATCCCGTAGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACCGACGAGTTTCGGATGTTCTCCTTCAAGGTTAGGCCTTGTTCCCGGGCCTACTCTCATGATTGGACGGAGTGCCCATTTGTTCACCCTGGAGAGAACGCAAGGAGGAGAGACCCTAGGAAGTTTCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGAGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGTACTAGCTGCAATCGTAGGGTTTGTTTTTTCGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTATCCACTGGATCTGCTGTTCCTTCACCACGGTCATCGGCCTCGGCTGCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTCTGCCGGGTTCGCCTTCGTCTGTATCTTCCATGTCGCCATCTCACTTTGGGCAACCGATGTCCCCATCTGCCAATGGCATGTCACTTTCCTCTGGTGCTTGGGCACAGCCAAACGTGCCTGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCCGAAGACTTGAACGGAATGCTTGATCTTGATGGCCACCAGCACCCTTTAAATGACTTGAGCTGTTACTTACAGCCTCGCCCTGGTACTGGCTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCAGCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCATCGTCTCCCCGGTATTCGGATCCAGCAGCCGCGTCTGTGTTTTCTCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGATACAGAGCATGTTATCGCCAATTAATACTAATTTGCTTTCTCCTAAGAGCGTTGACCATCCTCTTTTACAGGCCTCCTTTGGTGTCTCTTCGTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCGATGAGCACGCGCATGTCGGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCAGCTACAGCTGCGAAGTTTCAGTTCGAGGGACCTTGGTGCCAACAGTCCTGCCTCAATTGTTGGCTCCCCTGTAATCGGTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAATGGAGACGAGCTTGGTGGTAAGATGCGAAGGTCGTCCTCATTCGAGCTTAAGCACAATGGCGAAGAGCCTGACCTGTCATGGGTCCAGTCTCTGGTAAAGGAATCCCCACCTGAGATGATGAAAGAGAGGTTTGCTTCTCCTCTGCCCACAGCACCATCAGCGGATGGACCAAATTCTAATCCTCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2121 0.495 MKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDPSAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKLLLSAGADASCMDAYGNRPVDVIVVPPKLQEMKPVLEELLSDSASDGSIGGSIGELSVPVSVNSSSPGSPNGLPYSPSASPPSPVVAKFTEAAIGSLSEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAANVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMLDLDGHQHPLNDLSCYLQPRPGTGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNLLSPKSVDHPLLQASFGVSSSGRMSPRSVEPISPMSTRMSAFAQREKQQQQQQLQLRSFSSRDLGANSPASIVGSPVIGWSKWGSPNGKADWSVNGDELGGKMRRSSSFELKHNGEEPDLSWVQSLVKESPPEMMKERFASPLPTAPSADGPNSNPQIESIDHSVLGAWLEQMQLDQLVV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00071 706 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Vian5g00071 706 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Vian5g00071 706 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Vian5g00071 706 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Vian5g00071 706 PANTHER UNKEMPT FAMILY MEMBER 17 656 IPR045234 -
Vian5g00071 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vian5g00071 706 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Vian5g00071 706 Gene3D - 3 156 IPR036770 -
Vian5g00071 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Vian5g00071 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vian5g00071 706 MobiDBLite consensus disorder prediction 657 685 - -
Vian5g00071 706 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Vian5g00071 706 MobiDBLite consensus disorder prediction 376 396 - -
Vian5g00071 706 MobiDBLite consensus disorder prediction 173 193 - -
Vian5g00071 706 Gene3D - 274 337 - -
Vian5g00071 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vian5g00071 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vian5g00071 706 SMART ANK_2a 10 40 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00071 Vian-Chr5 1280349 1282469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00071 9 703 C2H2 Transcription Factor Family AT5G12850 54.494 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian5g00071 Ank_2 1.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00071 - - gmx:100784225 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00071 5 1280349 1282469 Vian5g00071 5 1280349 1282469 ECH