Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00064 ATGACAGATCCTAAGTCCAACATGTTCAATGAATGGTTCAACTTCATGCTCTTCCAACCTCACTACTCTTCCTCTTCCTCTTCTCAACCCTACCACCACCCTCTTGCCAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGACCCTCATCTTCATCTTTATCTGCATCTTCATCTTCATCTTCATCTTCATATTCATATGCATATGCATATGCAGCAGCTCCTCCTCCTCCTCCTTCTTCCCCTCCTCTAAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTGACAGGTGAGCAGCTCCAACAAAATGAACCCTCAAATGTTGTTGTGGAAGAGAGAGAAGAGGAGAAGGTGGAGAACAATGGAGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTGTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAGCACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAGCCAACAGCTATGCTGAGGCTTCCATGCTTTTGTTGTGCAGCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACTCTTCAAACACACTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAGTGCAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGCGGCAAAATATGGTATTGCTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGATCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAGATTGAACATGATGGAGAACATTCAATATGA 1080 0.4361 MTDPKSNMFNEWFNFMLFQPHYSSSSSSQPYHHPLANYSNNRFGIQLQGPSSSSLSASSSSSSSSYSYAYAYAAAPPPPPSSPPLREALPLINKISLTGEQLQQNEPSNVVVEEREEEKVENNGEDGDEETVTVALHIGLPRMDTCSDLGSSRVSSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAAGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGEHSI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00064 359 FunFam Zinc finger protein WIP2 251 333 - -
Vian5g00064 359 SUPERFAMILY beta-beta-alpha zinc fingers 266 302 IPR036236 -
Vian5g00064 359 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Vian5g00064 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Vian5g00064 359 Gene3D Classic Zinc Finger 251 332 - -
Vian5g00064 359 Gene3D Classic Zinc Finger 197 220 - -
Vian5g00064 359 PANTHER ZINC FINGER PROTEIN WIP2 50 354 IPR043584 GO:0003700|GO:0010468
Vian5g00064 359 MobiDBLite consensus disorder prediction 102 128 - -
Vian5g00064 359 Pfam C2H2-type zinc finger 198 217 - -
Vian5g00064 359 SMART c2h2final6 282 302 IPR013087 -
Vian5g00064 359 SMART c2h2final6 198 220 IPR013087 -
Vian5g00064 359 FunFam zinc finger protein WIP2-like 197 220 - -
Vian5g00064 359 SUPERFAMILY beta-beta-alpha zinc fingers 194 220 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00064 Vian-Chr5 1057718 1060056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00064 1 357 C2H2 Transcription Factor Family AT3G57670 53.500 5.60e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g00064 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00064 - - gmx:100794446 559.296