Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00062 ATGGATGAAAGCTCTTGGACTGACGTAGATCTTCTCAGAGCTTCAAAGCCATTTGCATGGTCTTATGCAGTTTCAAAGACATTGACAGAGAAGGCAGTGCTTGAATTTGGAGAACAAAATGCCTTGGATGTTGTGACTCTAATTCCATCTTTTGTTTTTGGATCCTTCATTATTCCAAAGCTTCCTGGCTCGGTTCATGCTTCATTCAAATTTGCATGTGGAGAAGAAACTACATTTGGTTCCCTCCTTGAGGTAGCTATGGTACATGTGGATGATGTGGCTAGAGCACATATATTTCTGCTGGAGAATCAAAATCCAAAAGGGAGGTATAATTGTTCAAAATGTTTGGTTACTTATGAAAGGATCTCTGAACTTGTTTCTGCCAAATACCAAGAATTTAAGCCAAAGACAGTAGACAAAATGGAAGGTACAAAGATACCAGATTTATCATCAAAGAAGCTCACAGATGCTGGATTTGTGTTCAAGTATGGAGTTGAGGAGATGCTTGATGATGCAATTCAATGCTGCAAGGAAAAAGGGATATCTCTTAAGGAATAA 558 0.3871 MDESSWTDVDLLRASKPFAWSYAVSKTLTEKAVLEFGEQNALDVVTLIPSFVFGSFIIPKLPGSVHASFKFACGEETTFGSLLEVAMVHVDDVARAHIFLLENQNPKGRYNCSKCLVTYERISELVSAKYQEFKPKTVDKMEGTKIPDLSSKKLTDAGFVFKYGVEEMLDDAIQCCKEKGISLKE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00062 185 Pfam NAD dependent epimerase/dehydratase family 19 112 IPR001509 -
Vian5g00062 185 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 179 IPR036291 -
Vian5g00062 185 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 173 - -
Vian5g00062 185 Gene3D - 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00062 Vian-Chr5 1047036 1048040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00062 1 180 Monolignol Biosynthesis Gene Families AT2G02400 33.871 3.22e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00062 - K13265 gmx:100796029 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00062 5 1047036 1048040 Vian5g00062 5 1047036 1048040 ECH