Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00059 ATGAGACTGAAATTGGCAGTTGAGATGTATGACACTTCTTCTCATGTTATGGGGTTGCAGAATCCAGGACAGATGAAATTACACTCTGGTGGAATAGTATGGAAGAGACAGGGCGGTGGTAAATTAATTGAAGTTGATAAATCTGATATAGAGGGGGTAACATGGATGAAGGTTCCAAAGACTAACCAACTTGGTGTTCAAATTAAAGATGGGTTGTACTACAAGTTCACTGGATTTCGTGATCAGGATGTTGTAAGTTTGACCAATTTTTTCCAGAGCACTTGTGGAATAACAGTGCGCGAGAAGCAGCTTTCTGTTAGCGGAAGAAATTGGGGAGAAGTTGATCTGAATGGAAATATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCGCTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAGTTCCAACACCCAGTTTGTTGGCGATGAAAAAACTCCTCCTGCTGAAGTTTTCCGCAGCAGAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGAGTATTGCGATCCTTACACCAAGAGGACGATACATTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAATCTGATTATGTTGTCCAAAGTGAATTGGCAATGAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTAGAGCTGTCTTACAAGGCGCTTATTCATGAAGTATTCACTACAATATTACGTGGGTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAGGATGGTTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCGACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCCGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCCGAACAAGAGCATCTCTTCCGTAATATCCAGAGAAATGAGTACCATAATTTGTATGAATTTATTAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGGCCAACCTACTGCTGGTATAAAGAAGGTTCTGGAGAATGACGATGATGATGCTGTTGATCCACATCTTGAGCGAATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGGAGATGATTCTGATGCCAGTAAAAGTGGCGAGGAGAAAGAGGCACGTGCCAAGAAGGAAATAAAGAAGGACCTGCCTCCTAAGGCATCTACTTCTAAAAAGAAACCAAAAGATGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAGAAAGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTCAAGAAAACAAACCCCGGAATCTCATTTACGGATGTGGGAAGAGTACTAGGAGAGAAATGGAAAAAAATGTCAGCGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAACAACGTTACAAGGATGAAATTAGCGGCTACAAGAATACCCAACCCATGAATATTGATTCAGCAAATGTAACTGACAGTGCCTAA 1929 0.4054 MRLKLAVEMYDTSSHVMGLQNPGQMKLHSGGIVWKRQGGGKLIEVDKSDIEGVTWMKVPKTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFQSTCGITVREKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFESIAILTPRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFESDYVVQSELAMNEDLYNTKYKDKLELSYKALIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDGQPTAGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGGDDSDASKSGEEKEARAKKEIKKDLPPKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKAREDKQRYKDEISGYKNTQPMNIDSANVTDSA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00059 642 MobiDBLite consensus disorder prediction 471 566 - -
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 221 237 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 358 376 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 243 259 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 266 282 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 331 344 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 402 418 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 376 393 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 PRINTS Structure-specific recognition protein signature 418 436 IPR000969 GO:0003677|GO:0005634
Vian5g00059 642 Pfam POB3-like N-terminal PH domain 20 99 IPR035417 -
Vian5g00059 642 Pfam Histone chaperone Rttp106-like 352 441 IPR013719 -
Vian5g00059 642 MobiDBLite consensus disorder prediction 503 549 - -
Vian5g00059 642 CDD PH2_SSRP1-like 344 443 - -
Vian5g00059 642 Gene3D High mobility group box domain 541 636 IPR036910 -
Vian5g00059 642 FunFam FACT complex subunit SSRP1 341 449 - -
Vian5g00059 642 FunFam FACT complex subunit SSRP1 13 95 - -
Vian5g00059 642 SUPERFAMILY HMG-box 545 628 IPR036910 -
Vian5g00059 642 SMART Rtt106_2 350 443 IPR013719 -
Vian5g00059 642 Gene3D - 10 94 IPR011993 -
Vian5g00059 642 CDD HMG-box_AtSSRP1 555 629 - -
Vian5g00059 642 MobiDBLite consensus disorder prediction 599 622 - -
Vian5g00059 642 MobiDBLite consensus disorder prediction 599 642 - -
Vian5g00059 642 Gene3D - 97 181 IPR038167 -
Vian5g00059 642 Coils Coil 608 628 - -
Vian5g00059 642 Gene3D - 341 449 IPR011993 -
Vian5g00059 642 MobiDBLite consensus disorder prediction 623 642 - -
Vian5g00059 642 CDD PH1_SSRP1-like 209 342 - -
Vian5g00059 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Vian5g00059 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 12 611 - -
Vian5g00059 642 FunFam Fact complex subunit ssrp1 201 340 - -
Vian5g00059 642 SMART hmgende2 557 627 IPR009071 -
Vian5g00059 642 SUPERFAMILY PH domain-like 208 442 - -
Vian5g00059 642 Pfam Structure-specific recognition protein (SSRP1) 108 176 IPR024954 -
Vian5g00059 642 Gene3D - 201 340 - -
Vian5g00059 642 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Vian5g00059 642 FunFam FACT complex subunit SSRP1 98 181 - -
Vian5g00059 642 FunFam FACT complex subunit SSRP1 542 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00059 Vian-Chr5 934936 939814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00059 554 626 ARID Transcription Factor Family AT1G04880 41.096 2.91e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vian5g00059 Rtt106 3.4e-20 CL0266