Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00058 ATGGCTCAGAAGGCGGAGAAAAACGACACCGACTTCAAGGTCCCGGAACCAATCACGCCCTGCGCCACCACAACCGCCGCCGCTGCAACTTCGATTTCCGAGCCTTCTAGATTCTTCGACGCTGTCGCTCCGCCCACGTCGTCGCGTTCGCCCAAGCGCTCGCTTCCGCAGGAGGACGCTGCGAGCGCGGACCGGACGGGGGCATCGGAGCCGAAGCGCGCGGTGAACAGGTGCTCGGGATGCCGGCGGCGCGTCGGGCTGACCGGATTTCGTTGTCGGTGCGGTGACCTCTTCTGCGCTGAGCACCGGTACACCGATCGCCACGACTGCTCCTACGACTACAAGGCAGCCGGGAGAGAGGTCATCGCGAGGGAGAATCCCGTCGTGAAGGCCGCGAAGATCGTGAAGCCGCAGCAAGATTTCGCGATTCCTTTTCCCATTGTTCTTGATAGTGACGCTTAA 462 0.6255 MAQKAEKNDTDFKVPEPITPCATTTAAAATSISEPSRFFDAVAPPTSSRSPKRSLPQEDAASADRTGASEPKRAVNRCSGCRRRVGLTGFRCRCGDLFCAEHRYTDRHDCSYDYKAAGREVIARENPVVKAAKIVKPQQDFAIPFPIVLDSDA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00058 153 Pfam AN1-like Zinc finger 78 115 IPR000058 GO:0008270
Vian5g00058 153 SUPERFAMILY AN1-like Zinc finger 65 131 IPR035896 -
Vian5g00058 153 MobiDBLite consensus disorder prediction 34 74 - -
Vian5g00058 153 ProSiteProfiles Zinc finger AN1-type profile. 72 118 IPR000058 GO:0008270
Vian5g00058 153 SMART AN1_Zf_4 78 115 IPR000058 GO:0008270
Vian5g00058 153 FunFam Zinc finger AN1-type containing 6 52 133 - -
Vian5g00058 153 Gene3D - 46 133 IPR035896 -
Vian5g00058 153 PANTHER AN1-TYPE ZINC FINGER PROTEIN 37 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00058 Vian-Chr5 931173 932570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00058 50 136 C2H2 Transcription Factor Family AT3G52800 52.874 3.23e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00058 - - gmx:100794830 216.468