Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00054 ATGAGCATTGTGTATAGCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGACATGGATTCAAATATCGGTCAACATTGTCACCAGCAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAATCTTGTGAACAATAACAACCACAACGTCAACAACAATATCAACAACAACAACATTGGATGTGTCAATGATGAAACTTTCAGAAGTGACCGTAATAACCATCAGCAGCAGCAGCAGAGCTATCATCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCTTCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACACAATGAGAGAGGTGGGAAGTTTTAGAGGCTGTGATGTATCAAATGGGCAAGCTATTGCATCCGGTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGATATCATCATCTTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAACCAAATTGTGTTGAAAGCAGAAACCTGAGGAATGACAGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAACAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGACTACCATGGAGAAGTTATACCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCGGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTACAAGTAACCAGAAGCAATAA 1326 0.4268 MSIVYSHAVKYSQEVTRMNTDMDSNIGQHCHQQNSGLMRYRSAPSSLLTNLVNNNNHNVNNNINNNNIGCVNDETFRSDRNNHQQQQQSYHPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSGYSFGSSPQIMYQTQQVQGFSMPNGSLRPAGNGFDGSFSAVNSMASQNSTQTKMVASTNCSNLIRQKSSPAGFFSNYSVDNTMREVGSFRGCDVSNGQAIASGSGLHGTLNFSSRISSSSCSTRMPQIAENGNEVVEPNCVESRNLRNDSGNTKCYMPSFTSDFWDGSAISASRTATNNCEISFSTSNAMDIQNADFGYQKLGLTHHLSLPSSSTRMTTMEKLYQTQGTVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLADTRAKCTCTSNQKQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00054 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 431 IPR036638 GO:0046983
Vian5g00054 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Vian5g00054 441 SMART finulus 375 425 IPR011598 GO:0046983
Vian5g00054 441 MobiDBLite consensus disorder prediction 111 130 - -
Vian5g00054 441 Pfam Helix-loop-helix DNA-binding domain 375 420 IPR011598 GO:0046983
Vian5g00054 441 Gene3D - 371 440 IPR036638 GO:0046983
Vian5g00054 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 435 - -
Vian5g00054 441 FunFam Transcription factor bHLH130 family 370 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00054 Vian-Chr5 856270 858929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00054 28 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.412 8.87e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g00054 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00054 - - gmx:100795896 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01282 11 20961270 20963406 Vian5g00054 5 856270 858929 ECH
Vian5g00054 5 856270 858929 Vian5g00054 5 856270 858929 ECH