LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00051	ATGGGTGCTGCACCTGATGCGGGTCAGCTAATGGCCATGTTCTTGAAGGTTTCGAATGCTAAAAAGACAATAGAAGTTGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCACTCACAATTCCAGATGATGGAAAAGGTGCCACAGACGTTCGTTCAAGCCTTCGTTCTTCTCGTTCGTTCAAGCCTTCTCTGTCGTCCGTCTTCTCTCTCGCTGTGTCGTCCGTCTTCTCGTTCGTTCAAGCCTTCGTTCTCTTGCCGTGTTCGAAGCTTCCATCCTCGGTTTCGTTCTGTCCTCCTTCTTCAAAACGTGCGTTGAAACCCTTACATTTTGGTGTAAGTAAAAATGGGCGAGCCCTGACATTGGCCGTTGCAATGGAAGGGAAAAAAGCAAGTTGGCGACTTCTTATCTCGATGGATTCATCCATCATTATTGAAATGAATCGTTTGCTCCGACAGTGTCATGTGGATCGGATTAGGATGACACCATTTATGTGGTGTGTGAATATTAATAACCCTGTGGAGGTGAATTTAAAATTATTGAAGGTTATGGTTAGCAGGTGGGTTGGAAATGATAACAGTTTTAGAGTTCGTCAAAAGTTGGTGCCGTTTAGAGTTGTTGATGTGTTGATGAGCTTAGGTTTAGAAATAGGTGGTTTAGAGATTCCCTTTGATGAAGTAGTTGGTGGATTGGTTGGTGAATTGTTCAAATCAAAAACCATCAGTTTGAAGGACTTGACAGACATGTTTAATGTCATTGTTGATGATAAAAACATTGAAGTCGATGTATTAAATATGGAGTGGTATATACGAAATGAAGATCGTCATAGGCCGGAAATCCGTGCAGCCTTCAACATGGATGACGGAGGAATGAGTGAAGGATCCAAGGTTGACCAAGACGATGATGAAGACGAAAGCTCTGATGACGGGGCATGGGAAGCAGTTGCGGAGGAGAGATTGAGGAAAAATAACGAACATATCAGAGCATTGAATGCCAAGATTGGAGTTCTGACTAGGGAGCTATTTGAAATTTATCAAAATCCAATCTTTCATGAAGAAGATGCATGTGCCACTGATGAAGAGGTTGGGGGTGGAGTTGGAGGTGAGGAGAATGCTCAAGTTGGGGGAGAAGAAGAAGGTGATGGACATGGAGTTGGAGGTGAGGAGAATGCTGAAGTTGGGGGAGAAGAAGAAGGTGATGGAAATGAAGTTGATGACCCCCTAGGTGCACATGCCGAAGTAAGAGGGGATGATGAAACTGTTCGTAACATTAATTTTATTGAAATAGAAGATGATGCTGATGAAGGAGAACCAGAGGTCGTTCCATTGGCTATACCCCCATTGCGGAGTTTTGTTGGTGATCCAAGCACTAGTGTTGATGTTAACCAATTGTATACAGCAGTCAGCATCAGAGAGATGAACGTACACAGGGTTGTAAGCGAGATAATTGGCCAAAGCTTGAGCACGACTTCAATTTACACTTTGGCCCCATTGAAATACGTTGATAACATGGTGGTGTTCTTTGCTTGTACGGTCTTTATGTACTTTGAGAAAAGGTTGTGCGGTGTTGTTAAGAGGTTTCATTTTAGTCCGTTATACTCGCACCATATTCTTACAGATTATAGGAAACGTCCACAGAATCGCCATGTATTCACGCTTCATAACTATAACACTTATTTGCGTTCCGATCATTTTGGACTTGAAGAATTACCCACGGCGGACTTTTTGTTTCTGCCATTTGTCCACGATGATCATTGGTGGTGTTATTCAGTGAAGTTGAGGTCAATGGAGATTTTTGTGATCGATTCATTGGGGAAGGGGATCAGAGACCGCAAAAGGATAGACACAGCCGTTGCTGAAAATATGGCACGGTTTTTTTGCATCCTGATGAATATACCGGAAGGTAGTATTGCTCCTTTGACAGTTAAACAAGCAAATATCCCATCCCAACCAAACTTACATGATTGTGGAGTAATAATGTTGAAAGCAATGGAAATCTGGGATGGAGATGAAAAATACAACGGGAAAAGCATGCCTGAATATACAACTGAGGAGCTGCTTGGGATTAGAAAGAAATATGTGTGTGACTGGATCCTGGACAACGAGAACACTAGCAGAATGGAAGCCCTATATCTATACGACATTGTCTAG	2151	0.4263	MGAAPDAGQLMAMFLKVSNAKKTIEVGVFTGYSLLLTALTIPDDGKGATDVRSSLRSSRSFKPSLSSVFSLAVSSVFSFVQAFVLLPCSKLPSSVSFCPPSSKRALKPLHFGVSKNGRALTLAVAMEGKKASWRLLISMDSSIIIEMNRLLRQCHVDRIRMTPFMWCVNINNPVEVNLKLLKVMVSRWVGNDNSFRVRQKLVPFRVVDVLMSLGLEIGGLEIPFDEVVGGLVGELFKSKTISLKDLTDMFNVIVDDKNIEVDVLNMEWYIRNEDRHRPEIRAAFNMDDGGMSEGSKVDQDDDEDESSDDGAWEAVAEERLRKNNEHIRALNAKIGVLTRELFEIYQNPIFHEEDACATDEEVGGGVGGEENAQVGGEEEGDGHGVGGEENAEVGGEEEGDGNEVDDPLGAHAEVRGDDETVRNINFIEIEDDADEGEPEVVPLAIPPLRSFVGDPSTSVDVNQLYTAVSIREMNVHRVVSEIIGQSLSTTSIYTLAPLKYVDNMVVFFACTVFMYFEKRLCGVVKRFHFSPLYSHHILTDYRKRPQNRHVFTLHNYNTYLRSDHFGLEELPTADFLFLPFVHDDHWWCYSVKLRSMEIFVIDSLGKGIRDRKRIDTAVAENMARFFCILMNIPEGSIAPLTVKQANIPSQPNLHDCGVIMLKAMEIWDGDEKYNGKSMPEYTTEELLGIRKKYVCDWILDNENTSRMEALYLYDIV	716

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00051	716	Pfam	Ulp1 protease family, C-terminal catalytic domain	553	666	IPR003653	GO:0006508\|GO:0008234
	Vian5g00051	716	SUPERFAMILY	Cysteine proteinases	476	694	IPR038765	-
	Vian5g00051	716	Gene3D	Vaccinia Virus protein VP39	1	70	IPR029063	-
	Vian5g00051	716	ProSiteProfiles	Ubiquitin-like protease family profile.	485	667	IPR003653	GO:0006508\|GO:0008234
	Vian5g00051	716	PANTHER	O-METHYLTRANSFERASE-RELATED	1	51	-	-
	Vian5g00051	716	MobiDBLite	consensus disorder prediction	283	310	-	-
	Vian5g00051	716	Pfam	O-methyltransferase	1	46	IPR002935	GO:0008171
	Vian5g00051	716	Gene3D	Adenoviral Proteinase; Chain A	458	700	-	-
	Vian5g00051	716	MobiDBLite	consensus disorder prediction	359	415	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00051	Vian-Chr5	842114	845827	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00051	1	46	Monolignol Biosynthesis Gene Families	AT4G26220	78.261	8.51e-17	78.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00051	-		K00588	var:108320067	594.349

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